Analysis of interatomic Contacts of Structural Units in PDB entry:
2WQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WQB entry

There is 1 chain in PDB entry 2WQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 816ALA 1120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2WQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
820 824Right-handed 310
Helix 2
2
A
909 917Right-handed alpha
Helix 3
3
A
918 923Right-handed alpha
Helix 4
4
A
923 930Right-handed alpha
Helix 5
5
A
937 950Right-handed alpha
Helix 6
6
A
952 957Right-handed alpha
Helix 7
7
A
966 968Right-handed 310
Helix 8
8
A
1001 1005Right-handed 310
Helix 9
9
A
1006 1013Right-handed alpha
Helix 10
10
A
1016 1024Right-handed alpha
Helix 11
11
A
1026 1033Right-handed alpha
Helix 12
12
A
1043 1051Right-handed alpha
Helix 13
13
A
1064 1075Right-handed alpha
Helix 14
14
A
1078 1082Right-handed 310
Helix 15
15
A
1084 1098Right-handed alpha
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There are 3 sheets in PDB entry 2WQB. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 829first strand
Strand 2
A
838 844anti-parallel
Strand 3
A
849 857anti-parallel
Strand 4
A
898 903anti-parallel
Strand 5
A
892 893anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
970 971first strand
Strand 2
A
979 980anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
991 992first strand
Strand 2
A
1014 1015anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il