Analysis of interatomic Contacts of Structural Units in PDB entry:
2WQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WQI entry

There are 4 chains in PDB entry 2WQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 352LEU 396
B
 THR 354LEU 396
C
 ASP 353GLN 397
D
 TYR 355ARG 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2WQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
362 377Right-handed alpha
Helix 2
2
A
378 380Right-handed 310
Helix 3
3
A
383 395Right-handed alpha
Helix 4
4
B
362 377Right-handed alpha
Helix 5
5
B
378 380Right-handed 310
Helix 6
6
B
383 396Right-handed alpha
Helix 7
7
C
362 379Right-handed alpha
Helix 8
8
C
383 394Right-handed alpha
Helix 9
9
D
362 377Right-handed alpha
Helix 10
10
D
378 380Right-handed 310
Helix 11
11
D
383 394Right-handed alpha
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There are 2 sheets in PDB entry 2WQI. Click on sheet of interest to get list of strands forming it: AA, CA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
B
355 359anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
355 358first strand
Strand 2
D
356 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il