Analysis of interatomic Contacts of Structural Units in PDB entry:
2WTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WTV entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 2WTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 125ARG 286
A
 LEU 289LEU 289
A
 GLY 291LYS 389
B
 ARG 126ARG 286
B
 LEU 289LEU 289
B
 GLY 291LYS 389
C
 ARG 126ARG 286
C
 LEU 289LEU 289
C
 GLY 291LYS 389
D
 LYS 125ARG 286
D
 LEU 289LEU 289
D
 GLY 291LYS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2WTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 131Right-handed 310
Helix 2
2
A
166 172Right-handed alpha
Helix 3
3
A
174 187Right-handed alpha
Helix 4
4
A
217 226Right-handed alpha
Helix 5
5
A
229 250Right-handed alpha
Helix 6
6
A
258 260Right-handed 310
Helix 7
7
A
292 296Right-handed 310
Helix 8
8
A
297 302Right-handed alpha
Helix 9
9
A
308 315Right-handed alpha
Helix 10
10
A
317 324Right-handed alpha
Helix 11
11
A
333 343Right-handed alpha
Helix 12
12
A
356 364Right-handed alpha
Helix 13
13
A
367 371Right-handed 310
Helix 14
14
A
373 379Right-handed alpha
Helix 15
15
A
380 387Right-handed alpha
Helix 16
16
B
129 131Right-handed 310
Helix 17
17
B
166 172Right-handed alpha
Helix 18
18
B
174 186Right-handed alpha
Helix 19
19
B
217 226Right-handed alpha
Helix 20
20
B
229 250Right-handed alpha
Helix 21
21
B
258 260Right-handed 310
Helix 22
22
B
292 296Right-handed 310
Helix 23
23
B
297 302Right-handed alpha
Helix 24
24
B
309 315Right-handed alpha
Helix 25
25
B
317 324Right-handed alpha
Helix 26
26
B
333 343Right-handed alpha
Helix 27
27
B
356 364Right-handed alpha
Helix 28
28
B
367 371Right-handed 310
Helix 29
29
B
373 379Right-handed alpha
Helix 30
30
B
380 387Right-handed alpha
Helix 31
31
C
129 131Right-handed 310
Helix 32
32
C
166 172Right-handed alpha
Helix 33
33
C
174 186Right-handed alpha
Helix 34
34
C
217 226Right-handed alpha
Helix 35
35
C
229 250Right-handed alpha
Helix 36
36
C
258 260Right-handed 310
Helix 37
37
C
292 296Right-handed 310
Helix 38
38
C
297 302Right-handed alpha
Helix 39
39
C
309 315Right-handed alpha
Helix 40
40
C
317 324Right-handed alpha
Helix 41
41
C
333 343Right-handed alpha
Helix 42
42
C
356 364Right-handed alpha
Helix 43
43
C
367 371Right-handed 310
Helix 44
44
C
373 379Right-handed alpha
Helix 45
45
C
380 387Right-handed alpha
Helix 46
46
D
129 131Right-handed 310
Helix 47
47
D
166 172Right-handed alpha
Helix 48
48
D
174 187Right-handed alpha
Helix 49
49
D
217 226Right-handed alpha
Helix 50
50
D
229 250Right-handed alpha
Helix 51
51
D
258 260Right-handed 310
Helix 52
52
D
292 296Right-handed 310
Helix 53
53
D
297 302Right-handed alpha
Helix 54
54
D
308 315Right-handed alpha
Helix 55
55
D
317 324Right-handed alpha
Helix 56
56
D
333 344Right-handed alpha
Helix 57
57
D
356 364Right-handed alpha
Helix 58
58
D
367 371Right-handed 310
Helix 59
59
D
373 379Right-handed alpha
Helix 60
60
D
380 387Right-handed alpha
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There are 8 sheets in PDB entry 2WTV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
200 201anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
271 272anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
147 152anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
205 211anti-parallel
Strand 5
B
200 201anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
271 272anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
147 152anti-parallel
Strand 3
C
158 165anti-parallel
Strand 4
C
205 210anti-parallel
Strand 5
C
200 201anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 263first strand
Strand 2
C
271 272anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 134first strand
Strand 2
D
147 152anti-parallel
Strand 3
D
158 165anti-parallel
Strand 4
D
205 210anti-parallel
Strand 5
D
200 201anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
262 263first strand
Strand 2
D
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il