Analysis of interatomic Contacts of Structural Units in PDB entry:
2WUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WUB entry

There are 8 chains in PDB entry 2WUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 16PRO 244
B
ALA 392LYS 398
C
ILE 16PRO 244
D
ALA 392HIS 397
H
GLU 1ASP 217
L
ASP 1CYS 214
Q
ASP 1CYS 214
R
GLU 1LYS 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2WUB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
60 62Right-handed 310
Helix 3
3
A
164 169Right-handed alpha
Helix 4
4
A
231 233Right-handed 310
Helix 5
5
A
234 243Right-handed alpha
Helix 6
6
C
55 59Right-handed 310
Helix 7
7
C
60 62Right-handed 310
Helix 8
8
C
164 169Right-handed alpha
Helix 9
9
C
234 243Right-handed alpha
Helix 10
10
H
28 32Right-handed 310
Helix 11
11
H
61 64Right-handed 310
Helix 12
12
H
73 75Right-handed 310
Helix 13
13
H
83 87Right-handed 310
Helix 14
14
H
156 158Right-handed 310
Helix 15
15
H
185 190Right-handed 310
Helix 16
16
H
201 204Right-handed 310
Helix 17
17
L
79 83Right-handed 310
Helix 18
18
L
121 128Right-handed alpha
Helix 19
19
L
183 188Right-handed alpha
Helix 20
20
Q
79 83Right-handed 310
Helix 21
21
Q
121 126Right-handed alpha
Helix 22
22
Q
183 188Right-handed alpha
Helix 23
23
R
61 64Right-handed 310
Helix 24
24
R
83 87Right-handed 310
Helix 25
25
R
156 158Right-handed 310
Helix 26
26
R
186 190Right-handed 310
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There are 27 sheets in PDB entry 2WUB. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB, CC, HA, HB, HC, HD, LA, LB, LC, LD, LE, LF, QA, QB, QC, QD, QE, QF, RA, RB, RC, RD, RE, RF,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 35first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
81 90anti-parallel
Strand 6
A
64 68anti-parallel
Strand 7
A
30 35anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 140first strand
Strand 2
A
156 163anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
226 229anti-parallel
Strand 5
A
206 213anti-parallel
Strand 6
A
198 203anti-parallel
Strand 7
A
135 140anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 35first strand
Strand 2
C
40 48anti-parallel
Strand 3
C
51 54anti-parallel
Strand 4
C
104 108anti-parallel
Strand 5
C
81 90anti-parallel
Strand 6
C
64 68anti-parallel
Strand 7
C
30 35anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
135 140first strand
Strand 2
C
156 161anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
180 183first strand
Strand 2
C
226 230anti-parallel
Strand 3
C
206 213anti-parallel
Strand 4
C
198 203anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 94anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 124first strand
Strand 2
H
136 145anti-parallel
Strand 3
H
176 184anti-parallel
Strand 4
H
163 165anti-parallel
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There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 200anti-parallel
Strand 3
H
205 211anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 66anti-parallel
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There are 4 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 6 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
97 98first strand
Strand 2
L
85 90anti-parallel
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There are 4 strands in LE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 3 strands in LF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
145 150first strand
Strand 2
L
191 197anti-parallel
Strand 3
L
205 210anti-parallel
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There are 4 strands in QA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
4 7first strand
Strand 2
Q
19 25anti-parallel
Strand 3
Q
70 75anti-parallel
Strand 4
Q
62 66anti-parallel
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There are 4 strands in QB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
10 13first strand
Strand 2
Q
102 106parallel
Strand 3
Q
85 90anti-parallel
Strand 4
Q
97 98anti-parallel
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There are 6 strands in QC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
10 13first strand
Strand 2
Q
102 106parallel
Strand 3
Q
85 90anti-parallel
Strand 4
Q
33 38anti-parallel
Strand 5
Q
45 49anti-parallel
Strand 6
Q
53 54anti-parallel
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There are 2 strands in QD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
97 98first strand
Strand 2
Q
85 90anti-parallel
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There are 4 strands in QE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
114 118first strand
Strand 2
Q
129 139anti-parallel
Strand 3
Q
173 182anti-parallel
Strand 4
Q
159 163anti-parallel
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There are 3 strands in QF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
145 150first strand
Strand 2
Q
191 197anti-parallel
Strand 3
Q
205 210anti-parallel
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There are 4 strands in RA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
3 7first strand
Strand 2
R
18 25anti-parallel
Strand 3
R
77 82anti-parallel
Strand 4
R
67 72anti-parallel
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There are 4 strands in RB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
11 12first strand
Strand 2
R
107 111parallel
Strand 3
R
88 95anti-parallel
Strand 4
R
100 103anti-parallel
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There are 6 strands in RC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
11 12first strand
Strand 2
R
107 111parallel
Strand 3
R
88 95anti-parallel
Strand 4
R
33 39anti-parallel
Strand 5
R
45 52anti-parallel
Strand 6
R
56 59anti-parallel
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There are 2 strands in RD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
100 103first strand
Strand 2
R
88 95anti-parallel
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There are 4 strands in RE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
120 123first strand
Strand 2
R
136 145anti-parallel
Strand 3
R
176 184anti-parallel
Strand 4
R
163 165anti-parallel
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There are 2 strands in RF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
151 154first strand
Strand 2
R
196 199anti-parallel
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