Analysis of interatomic Contacts of Structural Units in PDB entry:
2WUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WUD entry

There are 2 chains in PDB entry 2WUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7GLY 288
B
 LEU 7GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 2WUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
58 64Right-handed alpha
Helix 4
4
A
87 97Right-handed alpha
Helix 5
5
A
119 127Right-handed alpha
Helix 6
6
A
155 164Right-handed alpha
Helix 7
7
A
166 176Right-handed alpha
Helix 8
8
A
180 184Right-handed 310
Helix 9
9
A
185 197Right-handed alpha
Helix 10
10
A
198 208Right-handed alpha
Helix 11
11
A
221 225Right-handed 310
Helix 12
12
A
225 229Right-handed 310
Helix 13
13
A
249 256Right-handed alpha
Helix 14
14
A
270 275Right-handed alpha
Helix 15
15
A
275 287Right-handed alpha
Helix 16
16
B
8 12Right-handed alpha
Helix 17
17
B
50 55Right-handed alpha
Helix 18
18
B
58 64Right-handed alpha
Helix 19
19
B
87 97Right-handed alpha
Helix 20
20
B
119 127Right-handed alpha
Helix 21
21
B
128 131Right-handed 310
Helix 22
22
B
155 164Right-handed alpha
Helix 23
23
B
166 176Right-handed alpha
Helix 24
24
B
180 184Right-handed 310
Helix 25
25
B
185 197Right-handed alpha
Helix 26
26
B
198 208Right-handed alpha
Helix 27
27
B
221 225Right-handed 310
Helix 28
28
B
225 229Right-handed 310
Helix 29
29
B
249 256Right-handed alpha
Helix 30
30
B
270 275Right-handed alpha
Helix 31
31
B
275 287Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2WUD. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
24 31anti-parallel
Strand 3
A
67 71anti-parallel
Strand 4
A
38 42parallel
Strand 5
A
110 111parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
233 237parallel
Strand 3
A
259 263parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
24 31anti-parallel
Strand 3
B
67 71anti-parallel
Strand 4
B
38 42parallel
Strand 5
B
110 111parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
233 237parallel
Strand 3
B
259 263parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il