Analysis of interatomic Contacts of Structural Units in PDB entry:
2WVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WVG entry

There are 3 chains in PDB entry 2WVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LYS 566
B	SER 2	LYS 566
E	SER 2	ASN 196

There are111 helices in PDB entry 2WVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	16	Right-handed alpha
Helix 2	2	A	29	38	Right-handed alpha
Helix 3	3	A	49	65	Right-handed alpha
Helix 4	4	A	76	90	Right-handed alpha
Helix 5	5	A	102	106	Right-handed 310
Helix 6	6	A	122	129	Right-handed alpha
Helix 7	7	A	140	142	Right-handed 310
Helix 8	8	A	143	159	Right-handed alpha
Helix 9	9	A	169	171	Right-handed 310
Helix 10	10	A	181	186	Right-handed alpha
Helix 11	11	A	191	207	Right-handed alpha
Helix 12	12	A	225	237	Right-handed alpha
Helix 13	13	A	245	247	Right-handed 310
Helix 14	14	A	262	266	Right-handed 310
Helix 15	15	A	269	277	Right-handed alpha
Helix 16	16	A	323	335	Right-handed alpha
Helix 17	17	A	339	348	Right-handed alpha
Helix 18	18	A	366	376	Right-handed alpha
Helix 19	19	A	389	397	Right-handed alpha
Helix 20	20	A	417	429	Right-handed alpha
Helix 21	21	A	440	447	Right-handed alpha
Helix 22	22	A	449	456	Right-handed alpha
Helix 23	23	A	470	475	Right-handed alpha
Helix 24	24	A	479	483	Right-handed 310
Helix 25	25	A	488	498	Right-handed alpha
Helix 26	26	A	514	528	Right-handed alpha
Helix 27	27	A	545	561	Right-handed alpha
Helix 28	28	B	5	16	Right-handed alpha
Helix 29	29	B	29	38	Right-handed alpha
Helix 30	30	B	49	65	Right-handed alpha
Helix 31	31	B	76	90	Right-handed alpha
Helix 32	32	B	102	106	Right-handed 310
Helix 33	33	B	122	129	Right-handed alpha
Helix 34	34	B	130	132	Right-handed 310
Helix 35	35	B	140	142	Right-handed 310
Helix 36	36	B	143	159	Right-handed alpha
Helix 37	37	B	169	171	Right-handed 310
Helix 38	38	B	181	186	Right-handed alpha
Helix 39	39	B	191	207	Right-handed alpha
Helix 40	40	B	225	237	Right-handed alpha
Helix 41	41	B	245	247	Right-handed 310
Helix 42	42	B	262	266	Right-handed 310
Helix 43	43	B	269	277	Right-handed alpha
Helix 44	44	B	323	335	Right-handed alpha
Helix 45	45	B	339	348	Right-handed alpha
Helix 46	46	B	366	376	Right-handed alpha
Helix 47	47	B	389	397	Right-handed alpha
Helix 48	48	B	417	429	Right-handed alpha
Helix 49	49	B	440	447	Right-handed alpha
Helix 50	50	B	449	456	Right-handed alpha
Helix 51	51	B	470	475	Right-handed alpha
Helix 52	52	B	479	483	Right-handed 310
Helix 53	53	B	491	498	Right-handed alpha
Helix 54	54	B	514	528	Right-handed alpha
Helix 55	55	B	545	561	Right-handed alpha
Helix 56	56	E	5	16	Right-handed alpha
Helix 57	57	E	29	37	Right-handed alpha
Helix 58	58	E	49	65	Right-handed alpha
Helix 59	59	E	76	90	Right-handed alpha
Helix 60	60	E	102	106	Right-handed 310
Helix 61	61	E	122	129	Right-handed alpha
Helix 62	62	E	130	132	Right-handed 310
Helix 63	63	E	140	142	Right-handed 310
Helix 64	64	E	143	159	Right-handed alpha
Helix 65	65	E	169	171	Right-handed 310
Helix 66	66	E	181	186	Right-handed alpha
Helix 67	67	E	191	207	Right-handed alpha
Helix 68	68	E	225	237	Right-handed alpha
Helix 69	69	E	245	247	Right-handed 310
Helix 70	70	E	262	266	Right-handed 310
Helix 71	71	E	269	277	Right-handed alpha
Helix 72	72	E	323	335	Right-handed alpha
Helix 73	73	E	339	348	Right-handed alpha
Helix 74	74	E	366	376	Right-handed alpha
Helix 75	75	E	389	397	Right-handed alpha
Helix 76	76	E	417	429	Right-handed alpha
Helix 77	77	E	440	447	Right-handed alpha
Helix 78	78	E	449	456	Right-handed alpha
Helix 79	79	E	470	475	Right-handed alpha
Helix 80	80	E	479	483	Right-handed 310
Helix 81	81	E	488	498	Right-handed alpha
Helix 82	82	E	514	528	Right-handed alpha
Helix 83	83	E	545	561	Right-handed alpha
Helix 84	84	F	5	16	Right-handed alpha
Helix 85	85	F	29	38	Right-handed alpha
Helix 86	86	F	49	65	Right-handed alpha
Helix 87	87	F	76	90	Right-handed alpha
Helix 88	88	F	102	106	Right-handed 310
Helix 89	89	F	122	129	Right-handed alpha
Helix 90	90	F	130	132	Right-handed 310
Helix 91	91	F	140	142	Right-handed 310
Helix 92	92	F	143	159	Right-handed alpha
Helix 93	93	F	169	171	Right-handed 310
Helix 94	94	F	181	186	Right-handed alpha
Helix 95	95	F	191	207	Right-handed alpha
Helix 96	96	F	225	237	Right-handed alpha
Helix 97	97	F	245	247	Right-handed 310
Helix 98	98	F	262	266	Right-handed 310
Helix 99	99	F	269	277	Right-handed alpha
Helix 100	100	F	323	335	Right-handed alpha
Helix 101	101	F	339	348	Right-handed alpha
Helix 102	102	F	366	376	Right-handed alpha
Helix 103	103	F	389	397	Right-handed alpha
Helix 104	104	F	417	429	Right-handed alpha
Helix 105	105	F	440	447	Right-handed alpha
Helix 106	106	F	449	456	Right-handed alpha
Helix 107	107	F	470	475	Right-handed alpha
Helix 108	108	F	479	483	Right-handed 310
Helix 109	109	F	488	498	Right-handed alpha
Helix 110	110	F	514	528	Right-handed alpha
Helix 111	111	F	545	561	Right-handed alpha

There are 16 sheets in PDB entry 2WVG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, EA, EB, EC, FA, FB, FC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	174	175	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	20	23	parallel
Strand 3	A	67	71	parallel
Strand 4	A	94	100	parallel
Strand 5	A	162	167	parallel
Strand 6	A	135	138	parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	F	317	320	parallel
Strand 3	F	311	314	anti-parallel
Strand 4	F	304	307	anti-parallel
Strand 5	F	279	283	parallel
Strand 6	F	212	216	parallel
Strand 7	F	239	243	parallel
Strand 8	F	257	261	parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	A	239	243	parallel
Strand 3	A	212	216	parallel
Strand 4	A	279	283	parallel
Strand 5	A	304	307	parallel
Strand 6	A	311	314	anti-parallel
Strand 7	A	317	320	anti-parallel
Strand 8	F	177	178	parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	382	386	parallel
Strand 3	A	433	439	parallel
Strand 4	A	461	466	parallel
Strand 5	A	533	538	parallel
Strand 6	A	508	512	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	174	175	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	20	23	parallel
Strand 3	B	67	71	parallel
Strand 4	B	94	100	parallel
Strand 5	B	162	167	parallel
Strand 6	B	135	138	parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	E	317	320	parallel
Strand 3	E	311	314	anti-parallel
Strand 4	E	304	307	anti-parallel
Strand 5	E	279	283	parallel
Strand 6	E	212	216	parallel
Strand 7	E	239	243	parallel
Strand 8	E	257	261	parallel

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There are 8 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	B	239	243	parallel
Strand 3	B	212	216	parallel
Strand 4	B	279	283	parallel
Strand 5	B	304	307	parallel
Strand 6	B	311	314	anti-parallel
Strand 7	B	317	320	anti-parallel
Strand 8	E	177	178	parallel

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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	382	386	parallel
Strand 3	B	433	439	parallel
Strand 4	B	461	466	parallel
Strand 5	B	533	538	parallel
Strand 6	B	508	512	parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	174	175	anti-parallel

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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	20	23	parallel
Strand 3	E	67	71	parallel
Strand 4	E	94	100	parallel
Strand 5	E	162	167	parallel
Strand 6	E	135	138	parallel

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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	405	407	first strand
Strand 2	E	382	386	parallel
Strand 3	E	433	439	parallel
Strand 4	E	461	466	parallel
Strand 5	E	533	538	parallel
Strand 6	E	508	512	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	174	175	anti-parallel

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There are 6 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	20	23	parallel
Strand 3	F	67	71	parallel
Strand 4	F	94	100	parallel
Strand 5	F	162	167	parallel
Strand 6	F	134	138	parallel

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There are 6 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	407	first strand
Strand 2	F	382	386	parallel
Strand 3	F	433	439	parallel
Strand 4	F	461	466	parallel
Strand 5	F	533	538	parallel
Strand 6	F	508	512	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WVG