Analysis of interatomic Contacts of Structural Units in PDB entry:
2WW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WW9 entry

There are 15 chains in PDB entry 2WW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 490
B
 LEU 21VAL 80
C
 ARG 58LEU 78
D
 A 41 G 103
E
 U 528 C 561
F
 C 1654 G 1678
G
 G 912 C 929
H
 MET 1SER 269
I
 MET 1LYS 153
J
 MET 1LYS 53
K
 LEU 57ILE 139
L
 MET 1GLU 127
M
 THR 9TYR 92
N
 MET 1LEU 69
O
 MET 1TYR 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 2WW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
29 43Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
68 73Right-handed alpha
Helix 5
5
A
84 100Right-handed alpha
Helix 6
6
A
110 139Right-handed alpha
Helix 7
7
A
148 173Right-handed alpha
Helix 8
8
A
179 198Right-handed alpha
Helix 9
9
A
215 226Right-handed alpha
Helix 10
10
A
246 264Right-handed alpha
Helix 11
11
A
287 292Right-handed alpha
Helix 12
12
A
292 306Right-handed alpha
Helix 13
13
A
314 320Right-handed alpha
Helix 14
14
A
364 388Right-handed alpha
Helix 15
15
A
392 406Right-handed alpha
Helix 16
16
A
417 445Right-handed alpha
Helix 17
17
A
449 473Right-handed alpha
Helix 18
18
B
22 38Right-handed alpha
Helix 19
19
B
43 79Right-handed alpha
Helix 20
20
C
60 78Right-handed alpha
Helix 21
21
H
31 47Right-handed alpha
Helix 22
22
H
114 127Right-handed alpha
Helix 23
23
H
133 139Right-handed alpha
Helix 24
24
H
153 157Right-handed 310
Helix 25
25
H
162 173Right-handed alpha
Helix 26
26
H
175 182Right-handed alpha
Helix 27
27
H
190 194Right-handed 310
Helix 28
28
H
234 239Right-handed alpha
Helix 29
29
H
253 260Right-handed alpha
Helix 30
30
I
10 12Right-handed 310
Helix 31
31
I
25 35Right-handed alpha
Helix 32
32
I
40 54Right-handed alpha
Helix 33
33
I
85 102Right-handed alpha
Helix 34
34
J
4 15Right-handed alpha
Helix 35
35
J
28 34Right-handed alpha
Helix 36
36
J
39 48Right-handed alpha
Helix 37
37
K
69 80Right-handed alpha
Helix 38
38
K
91 104Right-handed alpha
Helix 39
39
L
11 21Right-handed alpha
Helix 40
40
L
37 44Right-handed alpha
Helix 41
41
L
100 102Right-handed 310
Helix 42
42
L
114 120Right-handed alpha
Helix 43
43
M
28 45Right-handed alpha
Helix 44
44
M
52 61Right-handed alpha
Helix 45
45
N
14 31Right-handed alpha
Helix 46
46
N
41 66Right-handed alpha
Helix 47
47
O
6 20Right-handed alpha
Helix 48
48
O
25 31Right-handed alpha
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There are 9 sheets in PDB entry 2WW9. Click on sheet of interest to get list of strands forming it: AA, HA, IA, IB, JA, KA, LA, LB, MA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
285 286anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 152first strand
Strand 2
H
248 251parallel
Strand 3
H
206 209parallel
Strand 4
H
226 229parallel
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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
14 22first strand
Strand 2
I
144 151anti-parallel
Strand 3
I
114 120anti-parallel
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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
125 132first strand
Strand 2
I
135 141anti-parallel
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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
22 24first strand
Strand 2
J
50 52anti-parallel
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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
63 66first strand
Strand 2
K
81 86anti-parallel
Strand 3
K
120 126anti-parallel
Strand 4
K
107 113anti-parallel
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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 34first strand
Strand 2
L
47 49anti-parallel
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There are 4 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
79 82first strand
Strand 2
L
67 74anti-parallel
Strand 3
L
55 58anti-parallel
Strand 4
L
104 108anti-parallel
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There are 3 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
10 14first strand
Strand 2
M
71 75anti-parallel
Strand 3
M
89 90anti-parallel
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