Analysis of interatomic Contacts of Structural Units in PDB entry:
2WWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WWR entry

There are 4 chains in PDB entry 2WWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 6LYS 327
B
LEU 6LYS 327
C
LEU 6LYS 327
D
LEU 6GLU 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2WWR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 25Right-handed alpha
Helix 2
2
A
41 49Right-handed alpha
Helix 3
3
A
64 72Right-handed alpha
Helix 4
4
A
89 96Right-handed alpha
Helix 5
5
A
107 124Right-handed alpha
Helix 6
6
A
125 135Right-handed alpha
Helix 7
7
A
162 173Right-handed alpha
Helix 8
8
A
174 176Right-handed 310
Helix 9
9
A
188 193Right-handed alpha
Helix 10
10
A
194 196Right-handed 310
Helix 11
11
A
201 209Right-handed alpha
Helix 12
12
A
227 234Right-handed alpha
Helix 13
13
A
245 248Right-handed 310
Helix 14
14
A
250 261Right-handed alpha
Helix 15
15
A
280 285Right-handed 310
Helix 16
16
A
298 319Right-handed alpha
Helix 17
17
B
16 25Right-handed alpha
Helix 18
18
B
41 49Right-handed alpha
Helix 19
19
B
64 72Right-handed alpha
Helix 20
20
B
89 96Right-handed alpha
Helix 21
21
B
107 124Right-handed alpha
Helix 22
22
B
125 135Right-handed alpha
Helix 23
23
B
162 173Right-handed alpha
Helix 24
24
B
174 176Right-handed 310
Helix 25
25
B
188 193Right-handed alpha
Helix 26
26
B
201 209Right-handed alpha
Helix 27
27
B
227 234Right-handed alpha
Helix 28
28
B
245 248Right-handed 310
Helix 29
29
B
250 261Right-handed alpha
Helix 30
30
B
280 285Right-handed 310
Helix 31
31
B
298 319Right-handed alpha
Helix 32
32
C
16 26Right-handed alpha
Helix 33
33
C
41 50Right-handed alpha
Helix 34
34
C
64 72Right-handed alpha
Helix 35
35
C
89 96Right-handed alpha
Helix 36
36
C
107 124Right-handed alpha
Helix 37
37
C
125 135Right-handed alpha
Helix 38
38
C
162 173Right-handed alpha
Helix 39
39
C
174 176Right-handed 310
Helix 40
40
C
189 196Right-handed 310
Helix 41
41
C
201 209Right-handed alpha
Helix 42
42
C
229 234Right-handed alpha
Helix 43
43
C
250 260Right-handed alpha
Helix 44
44
C
280 285Right-handed 310
Helix 45
45
C
298 319Right-handed alpha
Helix 46
46
D
16 25Right-handed alpha
Helix 47
47
D
41 49Right-handed alpha
Helix 48
48
D
64 72Right-handed alpha
Helix 49
49
D
107 124Right-handed alpha
Helix 50
50
D
125 135Right-handed alpha
Helix 51
51
D
162 173Right-handed alpha
Helix 52
52
D
174 176Right-handed 310
Helix 53
53
D
201 209Right-handed alpha
Helix 54
54
D
227 234Right-handed alpha
Helix 55
55
D
250 260Right-handed alpha
Helix 56
56
D
280 285Right-handed 310
Helix 57
57
D
298 319Right-handed alpha
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There are 8 sheets in PDB entry 2WWR. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 33first strand
Strand 2
A
7 11parallel
Strand 3
A
54 57parallel
Strand 4
A
77 80parallel
Strand 5
A
99 101parallel
Strand 6
A
325 326anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
198 199first strand
Strand 2
A
179 183parallel
Strand 3
A
155 159parallel
Strand 4
A
211 214parallel
Strand 5
A
239 242parallel
Strand 6
A
265 268parallel
Strand 7
A
288 290parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 33first strand
Strand 2
B
7 11parallel
Strand 3
B
54 57parallel
Strand 4
B
77 80parallel
Strand 5
B
99 101parallel
Strand 6
B
325 326anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
198 199first strand
Strand 2
B
179 183parallel
Strand 3
B
155 159parallel
Strand 4
B
211 214parallel
Strand 5
B
239 242parallel
Strand 6
B
265 268parallel
Strand 7
B
288 290parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 33first strand
Strand 2
C
7 11parallel
Strand 3
C
54 57parallel
Strand 4
C
77 80parallel
Strand 5
C
99 101parallel
Strand 6
C
325 326anti-parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
198 199first strand
Strand 2
C
179 183parallel
Strand 3
C
155 159parallel
Strand 4
C
211 214parallel
Strand 5
C
239 242parallel
Strand 6
C
265 268parallel
Strand 7
C
288 290parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 33first strand
Strand 2
D
7 11parallel
Strand 3
D
54 57parallel
Strand 4
D
77 80parallel
Strand 5
D
99 101parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
198 199first strand
Strand 2
D
179 183parallel
Strand 3
D
155 159parallel
Strand 4
D
211 214parallel
Strand 5
D
239 242parallel
Strand 6
D
265 268parallel
Strand 7
D
288 290parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il