Analysis of interatomic Contacts of Structural Units in PDB entry:
2X6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2X6D entry

There is 1 chain in PDB entry 2X6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 126SER 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2X6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 131Right-handed 310
Helix 2
2
A
177 187Right-handed alpha
Helix 3
3
A
217 225Right-handed alpha
Helix 4
4
A
229 250Right-handed alpha
Helix 5
5
A
258 260Right-handed 310
Helix 6
6
A
274 278Right-handed 310
Helix 7
7
A
297 302Right-handed alpha
Helix 8
8
A
308 325Right-handed alpha
Helix 9
9
A
333 343Right-handed alpha
Helix 10
10
A
353 364Right-handed alpha
Helix 11
11
A
367 371Right-handed 310
Helix 12
12
A
373 380Right-handed alpha
Helix 13
13
A
380 387Right-handed alpha
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There are 3 sheets in PDB entry 2X6D. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 141first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
196 201anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
279 280anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il