Analysis of interatomic Contacts of Structural Units in PDB entry:
2X6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2X6V entry

There are 4 chains in PDB entry 2X6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 53GLY 238
B
 GLU 52PHE 232
C
 T 1 T 11
D
 T 12 G 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 2X6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 71Right-handed alpha
Helix 2
2
A
145 151Right-handed alpha
Helix 3
3
A
207 210Right-handed 310
Helix 4
4
A
219 230Right-handed alpha
Helix 5
5
A
231 237Right-handed 310
Helix 6
6
B
60 71Right-handed alpha
Helix 7
7
B
145 151Right-handed alpha
Helix 8
8
B
206 210Right-handed 310
Helix 9
9
B
219 230Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 2X6V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, AF, AG, AH, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
153 154anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
211 214parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
200 205anti-parallel
Strand 5
B
200 204anti-parallel
Strand 6
B
178 187anti-parallel
Strand 7
B
211 214anti-parallel
Strand 8
B
73 75parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
211 214parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
99 108anti-parallel
Strand 5
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
99 108anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
211 214parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
200 205anti-parallel
Strand 5
B
200 204anti-parallel
Strand 6
B
178 187anti-parallel
Strand 7
B
99 108anti-parallel
Strand 8
B
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
99 108anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
211 214parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
99 108anti-parallel
Strand 5
A
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
159 161anti-parallel
Strand 3
A
171 172parallel
Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
120 126anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
88 92anti-parallel
Strand 3
B
153 154anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
159 161anti-parallel
Strand 3
B
171 172parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
121 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il