Analysis of interatomic Contacts of Structural Units in PDB entry:
2X8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2X8B entry

There are 3 chains in PDB entry 2X8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 5GLU 202
A
ALA 204ASP 547
B
THR 1TYR 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2X8B. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
42 46Right-handed 310
Helix 2
2
A
80 85Right-handed alpha
Helix 3
3
A
130 134Right-handed 310
Helix 4
4
A
135 143Right-handed alpha
Helix 5
5
A
153 159Right-handed alpha
Helix 6
6
A
170 187Right-handed alpha
Helix 7
7
A
188 190Right-handed 310
Helix 8
8
A
203 213Right-handed alpha
Helix 9
9
A
215 220Right-handed alpha
Helix 10
10
A
240 255Right-handed alpha
Helix 11
11
A
265 274Right-handed alpha
Helix 12
12
A
277 284Right-handed alpha
Helix 13
13
A
285 289Right-handed 310
Helix 14
14
A
311 319Right-handed alpha
Helix 15
15
A
335 342Right-handed 310
Helix 16
16
A
355 367Right-handed alpha
Helix 17
17
A
371 383Right-handed alpha
Helix 18
18
A
390 407Right-handed alpha
Helix 19
19
A
407 421Right-handed alpha
Helix 20
20
A
440 444Right-handed 310
Helix 21
21
A
450 455Right-handed alpha
Helix 22
22
A
456 460Right-handed 310
Helix 23
23
A
466 487Right-handed alpha
Helix 24
24
A
525 534Right-handed alpha
Helix 25
25
A
535 545Right-handed alpha
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There are 6 sheets in PDB entry 2X8B. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
59 61parallel
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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 22first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
145 149anti-parallel
Strand 5
A
112 118parallel
Strand 6
A
192 202parallel
Strand 7
A
224 228parallel
Strand 8
A
325 331parallel
Strand 9
A
424 430parallel
Strand 10
A
509 513parallel
Strand 11
A
520 522anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
38 39first strand
Strand 2
A
51 52anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 69first strand
Strand 2
A
92 93parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 5first strand
Strand 2
B
13 16anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
34 39first strand
Strand 2
B
22 27anti-parallel
Strand 3
B
48 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il