Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y6E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2Y6E entry

There are 8 chains in PDB entry 2Y6E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 297	THR 310
A	PHE 312	ASP 925
B	HIS 296	THR 310
B	PHE 312	THR 930
C	HIS 296	THR 310
C	PHE 312	ASP 924
D	ILE 297	THR 310
D	PHE 312	ARG 832

There are 72 helices in PDB entry 2Y6E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	310	322	Right-handed alpha
Helix 2	2	A	323	332	Right-handed alpha
Helix 3	3	A	334	339	Right-handed 310
Helix 4	4	A	349	363	Right-handed alpha
Helix 5	5	A	372	383	Right-handed alpha
Helix 6	6	A	384	387	Right-handed 310
Helix 7	7	A	393	409	Right-handed alpha
Helix 8	8	A	427	443	Right-handed alpha
Helix 9	9	A	445	452	Right-handed alpha
Helix 10	10	A	778	786	Right-handed alpha
Helix 11	11	A	852	854	Right-handed 310
Helix 12	12	A	906	910	Right-handed 310
Helix 13	13	B	310	322	Right-handed alpha
Helix 14	14	B	323	332	Right-handed alpha
Helix 15	15	B	335	339	Right-handed 310
Helix 16	16	B	349	363	Right-handed alpha
Helix 17	17	B	372	383	Right-handed alpha
Helix 18	18	B	384	388	Right-handed 310
Helix 19	19	B	393	409	Right-handed alpha
Helix 20	20	B	427	441	Right-handed alpha
Helix 21	21	B	445	452	Right-handed alpha
Helix 22	22	B	778	787	Right-handed alpha
Helix 23	23	B	852	854	Right-handed 310
Helix 24	24	B	906	910	Right-handed 310
Helix 25	25	B	925	929	Right-handed 310
Helix 26	26	C	310	322	Right-handed alpha
Helix 27	27	C	323	332	Right-handed alpha
Helix 28	28	C	334	339	Right-handed 310
Helix 29	29	C	349	363	Right-handed alpha
Helix 30	30	C	372	383	Right-handed alpha
Helix 31	31	C	384	387	Right-handed 310
Helix 32	32	C	393	409	Right-handed alpha
Helix 33	33	C	427	443	Right-handed alpha
Helix 34	34	C	445	452	Right-handed alpha
Helix 35	35	C	778	787	Right-handed alpha
Helix 36	36	C	852	854	Right-handed 310
Helix 37	37	C	906	910	Right-handed 310
Helix 38	38	D	310	322	Right-handed alpha
Helix 39	39	D	323	332	Right-handed alpha
Helix 40	40	D	334	339	Right-handed 310
Helix 41	41	D	349	363	Right-handed alpha
Helix 42	42	D	372	383	Right-handed alpha
Helix 43	43	D	384	387	Right-handed 310
Helix 44	44	D	393	409	Right-handed alpha
Helix 45	45	D	427	443	Right-handed alpha
Helix 46	46	D	445	452	Right-handed alpha
Helix 47	47	D	778	787	Right-handed alpha
Helix 48	48	D	852	854	Right-handed 310
Helix 49	49	D	906	910	Right-handed 310
Helix 50	50	E	310	322	Right-handed alpha
Helix 51	51	E	323	332	Right-handed alpha
Helix 52	52	E	334	339	Right-handed 310
Helix 53	53	E	349	363	Right-handed alpha
Helix 54	54	E	372	383	Right-handed alpha
Helix 55	55	E	384	387	Right-handed 310
Helix 56	56	E	393	409	Right-handed alpha
Helix 57	57	E	427	443	Right-handed alpha
Helix 58	58	E	445	452	Right-handed alpha
Helix 59	59	E	778	787	Right-handed alpha
Helix 60	60	E	852	854	Right-handed 310
Helix 61	61	E	906	910	Right-handed 310
Helix 62	62	F	310	322	Right-handed alpha
Helix 63	63	F	323	332	Right-handed alpha
Helix 64	64	F	334	339	Right-handed 310
Helix 65	65	F	349	363	Right-handed alpha
Helix 66	66	F	372	383	Right-handed alpha
Helix 67	67	F	384	388	Right-handed 310
Helix 68	68	F	393	409	Right-handed alpha
Helix 69	69	F	427	443	Right-handed alpha
Helix 70	70	F	445	452	Right-handed alpha
Helix 71	71	F	778	787	Right-handed alpha
Helix 72	72	F	906	910	Right-handed 310

There are 39 sheets in PDB entry 2Y6E. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	369	370	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	474	first strand
Strand 2	A	453	460	anti-parallel
Strand 3	A	809	816	anti-parallel
Strand 4	A	789	790	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	480	first strand
Strand 2	A	820	826	parallel
Strand 3	A	915	922	anti-parallel
Strand 4	A	864	874	anti-parallel
Strand 5	A	881	887	anti-parallel
Strand 6	A	894	898	anti-parallel
Strand 7	A	901	904	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	480	first strand
Strand 2	A	820	826	parallel
Strand 3	A	915	922	anti-parallel
Strand 4	A	864	874	anti-parallel
Strand 5	A	849	850	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	777	first strand
Strand 2	A	842	843	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	799	first strand
Strand 2	A	804	806	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	828	830	first strand
Strand 2	A	835	837	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	369	370	parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	474	first strand
Strand 2	B	453	460	anti-parallel
Strand 3	B	809	816	anti-parallel
Strand 4	B	789	790	anti-parallel

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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	480	first strand
Strand 2	B	820	826	parallel
Strand 3	B	915	922	anti-parallel
Strand 4	B	864	874	anti-parallel
Strand 5	B	881	887	anti-parallel
Strand 6	B	894	898	anti-parallel
Strand 7	B	901	904	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	480	first strand
Strand 2	B	820	826	parallel
Strand 3	B	915	922	anti-parallel
Strand 4	B	864	874	anti-parallel
Strand 5	B	849	850	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	777	first strand
Strand 2	B	842	843	parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	799	first strand
Strand 2	B	804	806	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	828	830	first strand
Strand 2	B	835	837	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	369	370	parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	474	first strand
Strand 2	C	453	460	anti-parallel
Strand 3	C	809	816	anti-parallel
Strand 4	C	789	790	anti-parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	480	first strand
Strand 2	C	820	826	parallel
Strand 3	C	915	922	anti-parallel
Strand 4	C	864	874	anti-parallel
Strand 5	C	881	887	anti-parallel
Strand 6	C	894	898	anti-parallel
Strand 7	C	901	904	anti-parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	480	first strand
Strand 2	C	820	826	parallel
Strand 3	C	915	922	anti-parallel
Strand 4	C	864	874	anti-parallel
Strand 5	C	849	850	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	777	first strand
Strand 2	C	842	843	parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	797	798	first strand
Strand 2	C	805	806	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	828	830	first strand
Strand 2	C	835	837	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	D	369	370	parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	474	first strand
Strand 2	D	453	459	anti-parallel
Strand 3	D	809	816	anti-parallel
Strand 4	D	789	790	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	479	first strand
Strand 2	D	820	825	parallel
Strand 3	D	915	922	anti-parallel
Strand 4	D	864	874	anti-parallel
Strand 5	D	881	887	anti-parallel
Strand 6	D	894	898	anti-parallel
Strand 7	D	901	904	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	479	first strand
Strand 2	D	820	825	parallel
Strand 3	D	915	922	anti-parallel
Strand 4	D	864	874	anti-parallel
Strand 5	D	849	850	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	777	first strand
Strand 2	D	841	843	parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	828	830	first strand
Strand 2	D	835	837	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	369	370	parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	467	474	first strand
Strand 2	E	453	460	anti-parallel
Strand 3	E	809	816	anti-parallel

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There are 7 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	477	480	first strand
Strand 2	E	820	826	parallel
Strand 3	E	915	922	anti-parallel
Strand 4	E	864	874	anti-parallel
Strand 5	E	881	887	anti-parallel
Strand 6	E	894	898	anti-parallel
Strand 7	E	901	904	anti-parallel

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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	477	480	first strand
Strand 2	E	820	826	parallel
Strand 3	E	915	922	anti-parallel
Strand 4	E	864	874	anti-parallel
Strand 5	E	849	850	anti-parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	776	777	first strand
Strand 2	E	842	843	parallel

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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	828	830	first strand
Strand 2	E	835	837	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	303	304	first strand
Strand 2	F	369	370	parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	467	474	first strand
Strand 2	F	453	460	anti-parallel
Strand 3	F	809	816	anti-parallel

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There are 7 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	480	first strand
Strand 2	F	820	826	parallel
Strand 3	F	915	922	anti-parallel
Strand 4	F	864	874	anti-parallel
Strand 5	F	881	887	anti-parallel
Strand 6	F	894	898	anti-parallel
Strand 7	F	901	904	anti-parallel

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There are 5 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	480	first strand
Strand 2	F	820	826	parallel
Strand 3	F	915	922	anti-parallel
Strand 4	F	864	874	anti-parallel
Strand 5	F	849	850	anti-parallel

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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	776	777	first strand
Strand 2	F	842	843	parallel

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There are 2 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	828	830	first strand
Strand 2	F	835	837	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2Y6E

Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y6E