Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8P entry

There are 2 chains in PDB entry 2Y8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 19HIS 208
B
 HIS 20HIS 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2Y8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 38Right-handed alpha
Helix 2
2
A
39 51Right-handed alpha
Helix 3
3
A
53 65Right-handed alpha
Helix 4
4
A
87 97Right-handed alpha
Helix 5
5
A
103 109Right-handed alpha
Helix 6
6
A
109 127Right-handed alpha
Helix 7
7
A
134 149Right-handed alpha
Helix 8
8
A
149 156Right-handed alpha
Helix 9
9
A
160 170Right-handed alpha
Helix 10
10
A
172 184Right-handed alpha
Helix 11
11
A
187 204Right-handed alpha
Helix 12
12
B
29 37Right-handed alpha
Helix 13
13
B
39 51Right-handed alpha
Helix 14
14
B
53 66Right-handed alpha
Helix 15
15
B
87 96Right-handed alpha
Helix 16
16
B
103 109Right-handed alpha
Helix 17
17
B
109 127Right-handed alpha
Helix 18
18
B
134 149Right-handed alpha
Helix 19
19
B
149 155Right-handed alpha
Helix 20
20
B
160 169Right-handed alpha
Helix 21
21
B
172 184Right-handed alpha
Helix 22
22
B
187 204Right-handed alpha
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There are no sheets in PDB entry 2Y8P
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il