Analysis of interatomic Contacts of Structural Units in PDB entry:
2YD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YD0 entry

There is 1 chain in PDB entry 2YD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 46ARG 940
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2YD0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
186 191Right-handed alpha
Helix 2
2
A
243 247Right-handed 310
Helix 3
3
A
275 278Right-handed 310
Helix 4
4
A
279 297Right-handed alpha
Helix 5
5
A
330 332Right-handed 310
Helix 6
6
A
340 357Right-handed alpha
Helix 7
7
A
368 371Right-handed 310
Helix 8
8
A
372 391Right-handed alpha
Helix 9
9
A
392 398Right-handed 310
Helix 10
10
A
399 412Right-handed alpha
Helix 11
11
A
425 432Right-handed alpha
Helix 12
12
A
434 452Right-handed alpha
Helix 13
13
A
453 469Right-handed alpha
Helix 14
14
A
474 484Right-handed alpha
Helix 15
15
A
516 526Right-handed alpha
Helix 16
16
A
602 605Right-handed 310
Helix 17
17
A
615 627Right-handed alpha
Helix 18
18
A
628 631Right-handed 310
Helix 19
19
A
632 648Right-handed alpha
Helix 20
20
A
653 662Right-handed alpha
Helix 21
21
A
663 667Right-handed 310
Helix 22
22
A
669 689Right-handed alpha
Helix 23
23
A
692 713Right-handed alpha
Helix 24
24
A
721 738Right-handed alpha
Helix 25
25
A
740 757Right-handed alpha
Helix 26
26
A
764 766Right-handed 310
Helix 27
27
A
767 776Right-handed alpha
Helix 28
28
A
778 790Right-handed alpha
Helix 29
29
A
794 806Right-handed alpha
Helix 30
30
A
810 824Right-handed alpha
Helix 31
31
A
828 830Right-handed 310
Helix 32
32
A
831 841Right-handed alpha
Helix 33
33
A
845 856Right-handed alpha
Helix 34
34
A
856 865Right-handed alpha
Helix 35
35
A
868 880Right-handed alpha
Helix 36
36
A
884 898Right-handed alpha
Helix 37
37
A
899 902Right-handed 310
Helix 38
38
A
905 936Right-handed alpha
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There are 8 sheets in PDB entry 2YD0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 119first strand
Strand 2
A
101 109anti-parallel
Strand 3
A
145 154anti-parallel
Strand 4
A
75 86anti-parallel
Strand 5
A
58 70anti-parallel
Strand 6
A
202 209parallel
Strand 7
A
231 236anti-parallel
Strand 8
A
221 228anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
90 96first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
121 125anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 168first strand
Strand 2
A
174 181anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
214 217first strand
Strand 2
A
249 252anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
305 311parallel
Strand 4
A
324 328parallel
Strand 5
A
318 319anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
364 366first strand
Strand 2
A
471 473parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
586 590first strand
Strand 2
A
541 549anti-parallel
Strand 3
A
530 538anti-parallel
Strand 4
A
609 612parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
578 582first strand
Strand 2
A
565 571anti-parallel
Strand 3
A
598 600anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il