Analysis of interatomic Contacts of Structural Units in PDB entry:
2YPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YPB entry

There are 4 chains in PDB entry 2YPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 181GLU 247
B
SER 536ASN 609
E
A 4 C 14
F
G 22 T 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2YPB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
181 183Right-handed 310
Helix 2
2
A
184 214Right-handed alpha
Helix 3
3
A
224 247Right-handed alpha
Helix 4
4
B
538 578Right-handed alpha
Helix 5
5
B
584 604Right-handed alpha
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There are no sheets in PDB entry 2YPB

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il