Analysis of interatomic Contacts of Structural Units in PDB entry:
2YTZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YTZ entry

There are 2 chains in PDB entry 2YTZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 2ARG 377
B
LEU 3LYS 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2YTZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
29 31Right-handed 310
Helix 2
2
A
32 47Right-handed alpha
Helix 3
3
A
59 69Right-handed alpha
Helix 4
4
A
80 95Right-handed alpha
Helix 5
5
A
120 128Right-handed alpha
Helix 6
6
A
143 153Right-handed alpha
Helix 7
7
A
166 171Right-handed alpha
Helix 8
8
A
174 183Right-handed alpha
Helix 9
9
A
191 209Right-handed alpha
Helix 10
10
A
236 245Right-handed alpha
Helix 11
11
A
283 296Right-handed alpha
Helix 12
12
A
301 315Right-handed alpha
Helix 13
13
A
324 330Right-handed alpha
Helix 14
14
A
337 348Right-handed alpha
Helix 15
15
A
367 377Right-handed alpha
Helix 16
16
B
29 31Right-handed 310
Helix 17
17
B
32 47Right-handed alpha
Helix 18
18
B
59 69Right-handed alpha
Helix 19
19
B
80 93Right-handed alpha
Helix 20
20
B
120 128Right-handed alpha
Helix 21
21
B
143 153Right-handed alpha
Helix 22
22
B
166 171Right-handed alpha
Helix 23
23
B
174 183Right-handed alpha
Helix 24
24
B
191 210Right-handed alpha
Helix 25
25
B
236 245Right-handed alpha
Helix 26
26
B
283 296Right-handed alpha
Helix 27
27
B
301 315Right-handed alpha
Helix 28
28
B
324 330Right-handed alpha
Helix 29
29
B
337 348Right-handed alpha
Helix 30
30
B
367 376Right-handed alpha
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There are 8 sheets in PDB entry 2YTZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 8first strand
Strand 2
A
11 16anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 102first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
113 118anti-parallel
Strand 4
A
73 78parallel
Strand 5
A
50 53parallel
Strand 6
A
132 137parallel
Strand 7
A
154 164parallel
Strand 8
A
226 235anti-parallel
Strand 9
A
213 223anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
259 263first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
273 277anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
322 323first strand
Strand 2
A
358 364anti-parallel
Strand 3
A
352 355anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 7first strand
Strand 2
B
12 15anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 102first strand
Strand 2
B
105 108anti-parallel
Strand 3
B
113 118anti-parallel
Strand 4
B
73 78parallel
Strand 5
B
50 53parallel
Strand 6
B
132 137parallel
Strand 7
B
154 164parallel
Strand 8
B
226 235anti-parallel
Strand 9
B
213 223anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
259 263first strand
Strand 2
B
247 252anti-parallel
Strand 3
B
273 277anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
322 323first strand
Strand 2
B
358 364anti-parallel
Strand 3
B
352 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il