Analysis of interatomic Contacts of Structural Units in PDB entry:
2YU2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YU2 entry

There is 1 chain in PDB entry 2YU2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34PRO 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2YU2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 46Right-handed alpha
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
63 71Right-handed alpha
Helix 4
4
A
95 102Right-handed alpha
Helix 5
5
A
123 131Right-handed alpha
Helix 6
6
A
151 157Right-handed 310
Helix 7
7
A
160 167Right-handed alpha
Helix 8
8
A
174 178Right-handed 310
Helix 9
9
A
214 218Right-handed 310
Helix 10
10
A
237 250Right-handed alpha
Helix 11
11
A
257 262Right-handed alpha
Helix 12
12
A
304 318Right-handed alpha
Helix 13
13
A
328 346Right-handed alpha
Helix 14
14
A
351 363Right-handed alpha
Helix 15
15
A
454 470Right-handed alpha
Helix 16
16
A
471 476Right-handed 310
Helix 17
17
A
484 499Right-handed alpha
Helix 18
18
A
503 508Right-handed alpha
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There are 3 sheets in PDB entry 2YU2. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
76 78parallel
Strand 3
A
275 278anti-parallel
Strand 4
A
219 234anti-parallel
Strand 5
A
283 299anti-parallel
Strand 6
A
208 212anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
283 299anti-parallel
Strand 5
A
219 234anti-parallel
Strand 6
A
266 270anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
121 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il