Analysis of interatomic Contacts of Structural Units in PDB entry:
2YV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YV1 entry

There is 1 chain in PDB entry 2YV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7GLY 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2YV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 36Right-handed alpha
Helix 2
2
A
61 70Right-handed alpha
Helix 3
3
A
79 93Right-handed alpha
Helix 4
4
A
106 121Right-handed alpha
Helix 5
5
A
144 148Right-handed 310
Helix 6
6
A
160 173Right-handed alpha
Helix 7
7
A
192 202Right-handed alpha
Helix 8
8
A
218 228Right-handed alpha
Helix 9
9
A
262 274Right-handed alpha
Helix 10
10
A
282 293Right-handed alpha
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There are 2 sheets in PDB entry 2YV1. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
40 44parallel
Strand 4
A
16 19parallel
Strand 5
A
73 76parallel
Strand 6
A
97 100parallel
Strand 7
A
123 125parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
153 157parallel
Strand 5
A
208 214parallel
Strand 6
A
234 239parallel
Strand 7
A
276 277parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il