Analysis of interatomic Contacts of Structural Units in PDB entry:
2YV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YV2 entry

There is 1 chain in PDB entry 2YV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2YV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 37Right-handed alpha
Helix 2
2
A
61 69Right-handed alpha
Helix 3
3
A
80 82Right-handed 310
Helix 4
4
A
83 94Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
145 149Right-handed 310
Helix 7
7
A
160 174Right-handed alpha
Helix 8
8
A
193 203Right-handed alpha
Helix 9
9
A
219 230Right-handed alpha
Helix 10
10
A
265 275Right-handed alpha
Helix 11
11
A
283 285Right-handed 310
Helix 12
12
A
286 295Right-handed alpha
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There are 2 sheets in PDB entry 2YV2. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
39 44parallel
Strand 4
A
15 19parallel
Strand 5
A
74 77parallel
Strand 6
A
98 101parallel
Strand 7
A
124 126parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
154 158parallel
Strand 5
A
209 214parallel
Strand 6
A
237 241parallel
Strand 7
A
279 281parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il