Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVC entry

There are 6 chains in PDB entry 2YVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 3PRO 297
B
SER 0LYS 296
C
ILE 5LYS 296
D
MET 7ASN 13
E
MET 7ASP 11
F
GLN 6ARG 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2YVC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
88 93Right-handed alpha
Helix 4
4
A
95 112Right-handed alpha
Helix 5
5
A
118 135Right-handed alpha
Helix 6
6
A
154 161Right-handed alpha
Helix 7
7
A
164 179Right-handed alpha
Helix 8
8
A
183 196Right-handed alpha
Helix 9
9
A
273 294Right-handed alpha
Helix 10
10
B
25 37Right-handed alpha
Helix 11
11
B
64 68Right-handed 310
Helix 12
12
B
88 93Right-handed alpha
Helix 13
13
B
95 112Right-handed alpha
Helix 14
14
B
118 135Right-handed alpha
Helix 15
15
B
154 161Right-handed alpha
Helix 16
16
B
164 179Right-handed alpha
Helix 17
17
B
183 196Right-handed alpha
Helix 18
18
B
273 294Right-handed alpha
Helix 19
19
C
25 38Right-handed alpha
Helix 20
20
C
88 93Right-handed alpha
Helix 21
21
C
95 112Right-handed alpha
Helix 22
22
C
118 135Right-handed alpha
Helix 23
23
C
154 159Right-handed alpha
Helix 24
24
C
164 177Right-handed alpha
Helix 25
25
C
183 196Right-handed alpha
Helix 26
26
C
273 294Right-handed alpha
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There are 7 sheets in PDB entry 2YVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 20first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
76 82parallel
Strand 4
A
45 50anti-parallel
Strand 5
A
56 58anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
203 209first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
238 241anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 270first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
245 251anti-parallel
Strand 4
D
8 11anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
56 58first strand
Strand 2
B
45 50anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
5 10parallel
Strand 5
B
15 20anti-parallel
Strand 6
F
18 20anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
232 241first strand
Strand 2
B
224 229anti-parallel
Strand 3
B
215 221anti-parallel
Strand 4
B
203 210anti-parallel
Strand 5
B
267 270anti-parallel
Strand 6
B
254 259anti-parallel
Strand 7
B
245 251anti-parallel
Strand 8
E
8 10anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
15 19first strand
Strand 2
C
6 10anti-parallel
Strand 3
C
75 82parallel
Strand 4
C
45 50anti-parallel
Strand 5
C
56 58anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
238 241first strand
Strand 2
C
224 229anti-parallel
Strand 3
C
215 221anti-parallel
Strand 4
C
207 210anti-parallel
Strand 5
C
267 270anti-parallel
Strand 6
C
254 259anti-parallel
Strand 7
C
245 251anti-parallel
Strand 8
F
8 10anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il