Analysis of interatomic Contacts of Structural Units in PDB entry:
2YVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YVX entry

There are 4 chains in PDB entry 2YVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7GLU 448
B
 VAL 7GLU 448
C
 VAL 7GLU 448
D
 VAL 7GLU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 2YVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 23Right-handed alpha
Helix 2
2
A
29 36Right-handed alpha
Helix 3
3
A
43 49Right-handed alpha
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
65 72Right-handed alpha
Helix 6
6
A
77 85Right-handed alpha
Helix 7
7
A
89 102Right-handed alpha
Helix 8
8
A
104 112Right-handed alpha
Helix 9
9
A
113 115Right-handed 310
Helix 10
10
A
116 124Right-handed alpha
Helix 11
11
A
134 138Right-handed 310
Helix 12
12
A
150 158Right-handed alpha
Helix 13
13
A
185 190Right-handed alpha
Helix 14
14
A
214 225Right-handed alpha
Helix 15
15
A
245 262Right-handed alpha
Helix 16
16
A
277 306Right-handed alpha
Helix 17
17
A
320 344Right-handed alpha
Helix 18
18
A
351 381Right-handed alpha
Helix 19
19
A
387 415Right-handed alpha
Helix 20
20
A
418 422Right-handed 310
Helix 21
21
A
426 445Right-handed alpha
Helix 22
22
B
18 23Right-handed alpha
Helix 23
23
B
29 36Right-handed alpha
Helix 24
24
B
43 49Right-handed alpha
Helix 25
25
B
53 63Right-handed alpha
Helix 26
26
B
65 72Right-handed alpha
Helix 27
27
B
77 85Right-handed alpha
Helix 28
28
B
89 102Right-handed alpha
Helix 29
29
B
104 112Right-handed alpha
Helix 30
30
B
113 115Right-handed 310
Helix 31
31
B
116 124Right-handed alpha
Helix 32
32
B
134 138Right-handed 310
Helix 33
33
B
150 158Right-handed alpha
Helix 34
34
B
185 190Right-handed alpha
Helix 35
35
B
214 225Right-handed alpha
Helix 36
36
B
245 262Right-handed alpha
Helix 37
37
B
277 306Right-handed alpha
Helix 38
38
B
320 344Right-handed alpha
Helix 39
39
B
351 381Right-handed alpha
Helix 40
40
B
387 415Right-handed alpha
Helix 41
41
B
418 422Right-handed 310
Helix 42
42
B
426 445Right-handed alpha
Helix 43
43
C
18 23Right-handed alpha
Helix 44
44
C
29 36Right-handed alpha
Helix 45
45
C
43 49Right-handed alpha
Helix 46
46
C
53 63Right-handed alpha
Helix 47
47
C
65 72Right-handed alpha
Helix 48
48
C
77 85Right-handed alpha
Helix 49
49
C
89 102Right-handed alpha
Helix 50
50
C
104 112Right-handed alpha
Helix 51
51
C
113 115Right-handed 310
Helix 52
52
C
116 124Right-handed alpha
Helix 53
53
C
133 138Right-handed 310
Helix 54
54
C
150 158Right-handed alpha
Helix 55
55
C
185 190Right-handed alpha
Helix 56
56
C
214 225Right-handed alpha
Helix 57
57
C
245 262Right-handed alpha
Helix 58
58
C
277 306Right-handed alpha
Helix 59
59
C
320 344Right-handed alpha
Helix 60
60
C
351 381Right-handed alpha
Helix 61
61
C
387 406Right-handed alpha
Helix 62
62
C
407 414Right-handed alpha
Helix 63
63
C
418 422Right-handed 310
Helix 64
64
C
426 445Right-handed alpha
Helix 65
65
D
18 23Right-handed alpha
Helix 66
66
D
29 36Right-handed alpha
Helix 67
67
D
43 49Right-handed alpha
Helix 68
68
D
53 63Right-handed alpha
Helix 69
69
D
65 72Right-handed alpha
Helix 70
70
D
77 85Right-handed alpha
Helix 71
71
D
89 102Right-handed alpha
Helix 72
72
D
104 112Right-handed alpha
Helix 73
73
D
113 115Right-handed 310
Helix 74
74
D
116 124Right-handed alpha
Helix 75
75
D
133 138Right-handed 310
Helix 76
76
D
150 158Right-handed alpha
Helix 77
77
D
185 190Right-handed alpha
Helix 78
78
D
214 225Right-handed alpha
Helix 79
79
D
245 262Right-handed alpha
Helix 80
80
D
277 306Right-handed alpha
Helix 81
81
D
320 344Right-handed alpha
Helix 82
82
D
351 381Right-handed alpha
Helix 83
83
D
387 414Right-handed alpha
Helix 84
84
D
418 422Right-handed 310
Helix 85
85
D
426 445Right-handed alpha
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There are 8 sheets in PDB entry 2YVX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
172 173parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
229 233parallel
Strand 3
A
239 244anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
172 173parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
229 233parallel
Strand 3
B
239 244anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 145first strand
Strand 2
C
172 173parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
229 233parallel
Strand 3
C
239 244anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 145first strand
Strand 2
D
172 173parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 210first strand
Strand 2
D
229 233parallel
Strand 3
D
239 244anti-parallel
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