Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZBM entry

There is 1 chain in PDB entry 2ZBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLN 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2ZBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
82 93Right-handed alpha
Helix 3
3
A
121 139Right-handed alpha
Helix 4
4
A
148 157Right-handed alpha
Helix 5
5
A
165 174Right-handed alpha
Helix 6
6
A
176 182Right-handed 310
Helix 7
7
A
185 193Right-handed alpha
Helix 8
8
A
211 217Right-handed alpha
Helix 9
9
A
220 232Right-handed alpha
Helix 10
10
A
235 242Right-handed alpha
Helix 11
11
A
242 250Right-handed alpha
Helix 12
12
A
258 262Right-handed 310
Helix 13
13
A
266 278Right-handed alpha
Helix 14
14
A
306 310Right-handed 310
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There are 4 sheets in PDB entry 2ZBM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
30 35anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
53 54anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
197 200parallel
Strand 3
A
203 206anti-parallel
Strand 4
A
281 284parallel
Strand 5
A
300 302parallel
Strand 6
A
293 295anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
108 111parallel
Strand 3
A
72 76parallel
Strand 4
A
315 319anti-parallel
Strand 5
A
322 326anti-parallel
Strand 6
A
332 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il