Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZGJ entry

There are 2 chains in PDB entry 2ZGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1SER 231
B
 SER 2SER 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2ZGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 44Right-handed 310
Helix 2
2
A
46 48Right-handed 310
Helix 3
3
A
147 152Right-handed alpha
Helix 4
4
A
220 229Right-handed alpha
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There are 3 sheets in PDB entry 2ZGJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
185 188anti-parallel
Strand 5
A
193 201anti-parallel
Strand 6
B
5 6anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
213 216anti-parallel
Strand 5
A
193 201anti-parallel
Strand 6
B
5 6anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
15 20anti-parallel
Strand 4
A
23 32anti-parallel
Strand 5
A
35 38anti-parallel
Strand 6
A
88 92anti-parallel
Strand 7
A
68 73anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il