Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZJD entry

There are 4 chains in PDB entry 2ZJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LYS 122
B
 GLY 335SER 344
C
 MET 1LYS 122
D
 ASP 338SER 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2ZJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed alpha
Helix 2
2
A
12 27Right-handed alpha
Helix 3
3
A
59 72Right-handed alpha
Helix 4
4
A
94 103Right-handed alpha
Helix 5
5
A
116 122Right-handed alpha
Helix 6
6
C
6 11Right-handed alpha
Helix 7
7
C
12 27Right-handed alpha
Helix 8
8
C
59 72Right-handed alpha
Helix 9
9
C
94 103Right-handed alpha
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There are 2 sheets in PDB entry 2ZJD. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
109 115anti-parallel
Strand 4
A
30 37parallel
Strand 5
A
51 55anti-parallel
Strand 6
B
341 342parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 83first strand
Strand 2
C
109 114anti-parallel
Strand 3
C
30 37parallel
Strand 4
C
51 55anti-parallel
Strand 5
D
341 342parallel
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