Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ZJR entry

There are 30 chains in PDB entry 2ZJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	G 1	A 2877
Y	C 2	U 123
A	LEU 33	THR 272
B	MET 1	SER 205
C	ALA 2	GLU 198
D	GLN 3	LYS 179
E	GLY 5	LYS 175
F	MET 74	ALA 144
G	LYS 30	LEU 171
H	MET 1	LEU 134
I	HIS 4	GLU 144
J	LYS 6	ALA 141
K	HIS 3	LEU 115
L	ARG 8	GLY 111
M	GLN 2	GLU 109
N	PRO 2	GLN 118
O	ILE 5	ILE 98
P	PHE 8	LYS 134
Q	SER 2	GLN 94
R	PRO 4	THR 113
S	MET 1	ARG 175
T	ALA 2	GLN 85
U	THR 8	GLU 79
V	MET 1	GLN 66
W	MET 1	GLU 55
Z	ALA 2	ALA 59
1	ALA 2	LYS 54
2	MET 1	ASP 46
3	PRO 2	ARG 64
4	MET 1	GLY 37

There are 73 helices in PDB entry 2ZJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	132	136	Right-handed 310
Helix 2	2	A	211	215	Right-handed 310
Helix 3	3	A	222	226	Right-handed 310
Helix 4	4	B	55	59	Right-handed 310
Helix 5	5	B	60	69	Right-handed alpha
Helix 6	6	B	115	121	Right-handed alpha
Helix 7	7	C	23	39	Right-handed alpha
Helix 8	8	C	96	114	Right-handed alpha
Helix 9	9	C	130	140	Right-handed alpha
Helix 10	10	C	154	159	Right-handed alpha
Helix 11	11	C	171	174	Right-handed 310
Helix 12	12	C	176	183	Right-handed alpha
Helix 13	13	D	5	10	Right-handed alpha
Helix 14	14	D	12	18	Right-handed alpha
Helix 15	15	D	48	62	Right-handed alpha
Helix 16	16	D	93	106	Right-handed alpha
Helix 17	17	D	142	146	Right-handed 310
Helix 18	18	D	162	173	Right-handed alpha
Helix 19	19	E	59	82	Right-handed alpha
Helix 20	20	E	137	149	Right-handed alpha
Helix 21	21	F	74	83	Right-handed alpha
Helix 22	22	F	100	112	Right-handed alpha
Helix 23	23	F	113	115	Right-handed 310
Helix 24	24	F	120	133	Right-handed alpha
Helix 25	25	G	50	64	Right-handed alpha
Helix 26	26	G	122	132	Right-handed alpha
Helix 27	27	G	133	135	Right-handed 310
Helix 28	28	G	138	146	Right-handed alpha
Helix 29	29	G	155	160	Right-handed 310
Helix 30	30	H	116	121	Right-handed alpha
Helix 31	31	H	123	129	Right-handed alpha
Helix 32	32	I	76	81	Right-handed alpha
Helix 33	33	I	93	99	Right-handed alpha
Helix 34	34	I	126	131	Right-handed alpha
Helix 35	35	I	133	137	Right-handed 310
Helix 36	36	J	44	59	Right-handed alpha
Helix 37	37	J	117	125	Right-handed alpha
Helix 38	38	K	15	31	Right-handed alpha
Helix 39	39	K	38	56	Right-handed alpha
Helix 40	40	K	59	67	Right-handed alpha
Helix 41	41	K	72	82	Right-handed alpha
Helix 42	42	K	82	87	Right-handed alpha
Helix 43	43	L	8	19	Right-handed alpha
Helix 44	44	L	67	81	Right-handed alpha
Helix 45	45	L	98	111	Right-handed alpha
Helix 46	46	M	8	16	Right-handed alpha
Helix 47	47	M	17	21	Right-handed 310
Helix 48	48	M	60	63	Right-handed 310
Helix 49	49	M	104	108	Right-handed 310
Helix 50	50	N	8	19	Right-handed alpha
Helix 51	51	N	25	30	Right-handed 310
Helix 52	52	N	31	70	Right-handed alpha
Helix 53	53	N	75	86	Right-handed alpha
Helix 54	54	N	94	102	Right-handed alpha
Helix 55	55	N	102	115	Right-handed alpha
Helix 56	56	P	10	18	Right-handed alpha
Helix 57	57	P	34	45	Right-handed alpha
Helix 58	58	P	49	60	Right-handed alpha
Helix 59	59	P	64	73	Right-handed alpha
Helix 60	60	P	75	80	Right-handed alpha
Helix 61	61	P	86	88	Right-handed 310
Helix 62	62	Q	13	21	Right-handed alpha
Helix 63	63	Q	34	47	Right-handed alpha
Helix 64	64	S	10	15	Right-handed alpha
Helix 65	65	S	35	47	Right-handed alpha
Helix 66	66	U	63	72	Right-handed alpha
Helix 67	67	V	10	20	Right-handed alpha
Helix 68	68	V	20	35	Right-handed alpha
Helix 69	69	V	39	61	Right-handed alpha
Helix 70	70	W	13	23	Right-handed alpha
Helix 71	71	W	37	47	Right-handed alpha
Helix 72	72	W	48	51	Right-handed 310
Helix 73	73	Z	14	21	Right-handed alpha

There are 38 sheets in PDB entry 2ZJR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	76	83	anti-parallel
Strand 4	A	116	118	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	192	193	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	172	177	anti-parallel
Strand 3	A	181	186	anti-parallel
Strand 4	A	267	268	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	16	first strand
Strand 2	B	19	27	anti-parallel
Strand 3	B	181	185	anti-parallel
Strand 4	B	164	176	anti-parallel
Strand 5	B	101	107	anti-parallel
Strand 6	B	195	199	anti-parallel
Strand 7	B	3	16	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	31	37	anti-parallel
Strand 4	B	89	90	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	114	first strand
Strand 2	B	158	161	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	170	first strand
Strand 2	C	148	151	parallel
Strand 3	C	185	187	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	33	35	anti-parallel
Strand 3	D	154	157	anti-parallel
Strand 4	D	129	130	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	25	26	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	88	first strand
Strand 2	E	130	135	anti-parallel
Strand 3	E	121	124	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	99	first strand
Strand 2	F	136	138	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	45	first strand
Strand 2	G	79	83	parallel
Strand 3	G	149	150	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	102	first strand
Strand 2	G	112	115	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	16	24	anti-parallel
Strand 3	H	50	58	anti-parallel
Strand 4	H	69	76	anti-parallel
Strand 5	H	95	99	anti-parallel
Strand 6	H	7	10	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	82	first strand
Strand 2	H	88	91	anti-parallel
Strand 3	M	75	82	anti-parallel
Strand 4	M	65	72	anti-parallel
Strand 5	M	54	56	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	75	first strand
Strand 2	I	107	108	parallel
Strand 3	I	124	125	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	102	105	first strand
Strand 2	J	34	37	anti-parallel
Strand 3	J	130	133	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	75	first strand
Strand 2	J	93	94	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	37	first strand
Strand 2	K	110	114	anti-parallel
Strand 3	K	96	99	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	50	first strand
Strand 2	L	42	44	anti-parallel
Strand 3	L	27	29	anti-parallel
Strand 4	L	88	89	parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	48	51	first strand
Strand 2	M	31	36	anti-parallel
Strand 3	M	88	95	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	17	21	first strand
Strand 2	O	90	94	anti-parallel
Strand 3	O	56	62	anti-parallel
Strand 4	O	31	34	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	39	40	first strand
Strand 2	O	45	46	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	69	74	first strand
Strand 2	O	81	86	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	25	31	first strand
Strand 2	P	122	130	anti-parallel
Strand 3	P	90	99	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	103	108	first strand
Strand 2	P	114	119	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	10	first strand
Strand 2	Q	26	29	anti-parallel
Strand 3	Q	76	81	anti-parallel
Strand 4	Q	52	55	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	45	48	first strand
Strand 2	R	33	40	anti-parallel
Strand 3	R	21	23	anti-parallel
Strand 4	R	81	82	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	21	24	first strand
Strand 2	S	78	84	parallel
Strand 3	S	66	71	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	93	97	first strand
Strand 2	S	119	123	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	99	101	first strand
Strand 2	S	135	137	parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	112	114	first strand
Strand 2	S	167	172	anti-parallel
Strand 3	S	146	148	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	30	31	first strand
Strand 2	T	65	72	anti-parallel
Strand 3	T	76	81	anti-parallel
Strand 4	T	46	47	parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	36	38	first strand
Strand 2	T	59	61	anti-parallel
Strand 3	T	51	52	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	23	24	first strand
Strand 2	U	36	37	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	2	4	first strand
Strand 2	W	31	33	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	31	32	first strand
Strand 2	Z	39	40	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	2	3	first strand
Strand 2	4	34	35	parallel
Strand 3	4	23	25	anti-parallel
Strand 4	4	17	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ZJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZJR