Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZKM entry

There is 1 chain in PDB entry 2ZKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 PRO 11ASP 799
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2ZKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
14 20Right-handed alpha
Helix 2
2
X
71 73Right-handed 310
Helix 3
3
X
78 85Right-handed alpha
Helix 4
4
X
93 96Right-handed 310
Helix 5
5
X
121 136Right-handed alpha
Helix 6
6
X
138 142Right-handed 310
Helix 7
7
X
143 158Right-handed alpha
Helix 8
8
X
167 174Right-handed alpha
Helix 9
9
X
177 188Right-handed alpha
Helix 10
10
X
199 203Right-handed 310
Helix 11
11
X
204 216Right-handed alpha
Helix 12
12
X
218 223Right-handed alpha
Helix 13
13
X
237 248Right-handed alpha
Helix 14
14
X
266 275Right-handed alpha
Helix 15
15
X
287 297Right-handed alpha
Helix 16
16
X
304 309Right-handed 310
Helix 17
17
X
317 319Right-handed 310
Helix 18
18
X
342 351Right-handed alpha
Helix 19
19
X
384 395Right-handed alpha
Helix 20
20
X
413 429Right-handed alpha
Helix 21
21
X
430 432Right-handed 310
Helix 22
22
X
518 528Right-handed alpha
Helix 23
23
X
529 535Right-handed 310
Helix 24
24
X
539 544Right-handed alpha
Helix 25
25
X
556 564Right-handed alpha
Helix 26
26
X
574 584Right-handed alpha
Helix 27
27
X
584 595Right-handed alpha
Helix 28
28
X
613 619Right-handed alpha
Helix 29
29
X
632 642Right-handed alpha
Helix 30
30
X
643 648Right-handed 310
Helix 31
31
X
654 658Right-handed 310
Helix 32
32
X
741 744Right-handed 310
Helix 33
33
X
767 769Right-handed 310
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There are 7 sheets in PDB entry 2ZKM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
56 60first strand
Strand 2
X
46 51anti-parallel
Strand 3
X
33 40anti-parallel
Strand 4
X
21 26anti-parallel
Strand 5
X
111 117anti-parallel
Strand 6
X
98 103anti-parallel
Strand 7
X
64 69anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
165 166first strand
Strand 2
X
197 198anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
321 323first strand
Strand 2
X
650 652anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
382 383first strand
Strand 2
X
371 372anti-parallel
Strand 3
X
355 361anti-parallel
Strand 4
X
403 409parallel
Strand 5
X
458 461parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
550 551first strand
Strand 2
X
568 573parallel
Strand 3
X
596 600parallel
Strand 4
X
623 624parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
734 739first strand
Strand 2
X
678 688anti-parallel
Strand 3
X
785 798anti-parallel
Strand 4
X
772 779anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
714 715first strand
Strand 2
X
697 704anti-parallel
Strand 3
X
746 753anti-parallel
Strand 4
X
757 765anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il