Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZM3 entry

There are 12 chains in PDB entry 2ZM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 980ILE 1160
A
GLU 1162ASP 1164
A
ARG 1167ASN 1285
B
SER 980ILE 1160
B
GLU 1162ASP 1164
B
ARG 1167ASN 1285
C
SER 980ILE 1160
C
GLU 1162ASP 1164
C
ARG 1167ASN 1285
D
SER 980ILE 1160
D
GLU 1162ASP 1164
D
ARG 1167ASN 1285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 2ZM3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
982 986Right-handed 310
Helix 2
2
A
995 997Right-handed 310
Helix 3
3
A
1040 1057Right-handed alpha
Helix 4
4
A
1086 1093Right-handed alpha
Helix 5
5
A
1108 1129Right-handed alpha
Helix 6
6
A
1137 1139Right-handed 310
Helix 7
7
A
1175 1179Right-handed 310
Helix 8
8
A
1180 1187Right-handed alpha
Helix 9
9
A
1190 1207Right-handed alpha
Helix 10
10
A
1217 1227Right-handed alpha
Helix 11
11
A
1238 1249Right-handed alpha
Helix 12
12
A
1252 1256Right-handed 310
Helix 13
13
A
1258 1267Right-handed alpha
Helix 14
14
A
1268 1270Right-handed 310
Helix 15
15
A
1271 1272Right-handed 310
Helix 16
16
A
1273 1278Right-handed alpha
Helix 17
17
B
982 986Right-handed 310
Helix 18
18
B
989 993Right-handed 310
Helix 19
19
B
995 997Right-handed 310
Helix 20
20
B
1040 1055Right-handed alpha
Helix 21
21
B
1086 1094Right-handed alpha
Helix 22
22
B
1108 1129Right-handed alpha
Helix 23
23
B
1137 1139Right-handed 310
Helix 24
24
B
1175 1179Right-handed 310
Helix 25
25
B
1180 1187Right-handed alpha
Helix 26
26
B
1190 1207Right-handed alpha
Helix 27
27
B
1217 1227Right-handed alpha
Helix 28
28
B
1238 1249Right-handed alpha
Helix 29
29
B
1252 1256Right-handed 310
Helix 30
30
B
1258 1267Right-handed alpha
Helix 31
31
B
1268 1270Right-handed 310
Helix 32
32
B
1271 1272Right-handed 310
Helix 33
33
B
1273 1278Right-handed alpha
Helix 34
34
C
982 987Right-handed alpha
Helix 35
35
C
995 997Right-handed 310
Helix 36
36
C
1040 1055Right-handed alpha
Helix 37
37
C
1086 1094Right-handed alpha
Helix 38
38
C
1108 1129Right-handed alpha
Helix 39
39
C
1137 1139Right-handed 310
Helix 40
40
C
1175 1179Right-handed 310
Helix 41
41
C
1180 1187Right-handed alpha
Helix 42
42
C
1190 1207Right-handed alpha
Helix 43
43
C
1217 1227Right-handed alpha
Helix 44
44
C
1238 1249Right-handed alpha
Helix 45
45
C
1252 1256Right-handed 310
Helix 46
46
C
1258 1265Right-handed alpha
Helix 47
47
C
1266 1270Right-handed 310
Helix 48
48
C
1271 1272Right-handed 310
Helix 49
49
C
1273 1278Right-handed alpha
Helix 50
50
D
982 986Right-handed 310
Helix 51
51
D
989 993Right-handed 310
Helix 52
52
D
995 997Right-handed 310
Helix 53
53
D
1040 1056Right-handed alpha
Helix 54
54
D
1086 1094Right-handed alpha
Helix 55
55
D
1108 1129Right-handed alpha
Helix 56
56
D
1137 1139Right-handed 310
Helix 57
57
D
1175 1179Right-handed 310
Helix 58
58
D
1180 1187Right-handed alpha
Helix 59
59
D
1190 1207Right-handed alpha
Helix 60
60
D
1217 1227Right-handed alpha
Helix 61
61
D
1238 1249Right-handed alpha
Helix 62
62
D
1252 1256Right-handed 310
Helix 63
63
D
1258 1267Right-handed alpha
Helix 64
64
D
1268 1270Right-handed 310
Helix 65
65
D
1271 1272Right-handed 310
Helix 66
66
D
1273 1278Right-handed alpha
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There are 16 sheets in PDB entry 2ZM3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
999 1007first strand
Strand 2
A
1012 1022anti-parallel
Strand 3
A
1025 1035anti-parallel
Strand 4
A
1075 1080anti-parallel
Strand 5
A
1065 1069anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1131 1132first strand
Strand 2
A
1158 1159anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1141 1143first strand
Strand 2
A
1149 1151anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1166 1167first strand
Strand 2
A
1188 1189anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
999 1007first strand
Strand 2
B
1012 1022anti-parallel
Strand 3
B
1025 1035anti-parallel
Strand 4
B
1075 1080anti-parallel
Strand 5
B
1065 1069anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1131 1132first strand
Strand 2
B
1158 1159anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1141 1143first strand
Strand 2
B
1149 1151anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1166 1167first strand
Strand 2
B
1188 1189anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
999 1007first strand
Strand 2
C
1012 1019anti-parallel
Strand 3
C
1027 1034anti-parallel
Strand 4
C
1076 1080anti-parallel
Strand 5
C
1065 1069anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1131 1132first strand
Strand 2
C
1158 1159anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1141 1143first strand
Strand 2
C
1149 1151anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1166 1167first strand
Strand 2
C
1188 1189anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
999 1007first strand
Strand 2
D
1012 1019anti-parallel
Strand 3
D
1027 1035anti-parallel
Strand 4
D
1075 1080anti-parallel
Strand 5
D
1065 1069anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1131 1132first strand
Strand 2
D
1158 1159anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1141 1143first strand
Strand 2
D
1149 1151anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1166 1167first strand
Strand 2
D
1188 1189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il