Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ZM6 entry

There are 21 chains in PDB entry 2ZM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 4	U 1532
B	VAL 7	GLY 228
C	GLY 2	VAL 207
D	GLY 2	ARG 209
E	ASP 5	GLY 154
F	MET 1	ALA 101
G	ALA 2	TYR 154
H	MET 1	TRP 138
I	TYR 4	ARG 128
J	LYS 3	THR 100
K	LYS 11	PHE 125
L	PRO 5	ALA 128
M	ALA 2	LYS 121
N	ALA 2	TRP 61
O	PRO 2	GLY 89
P	MET 1	GLU 83
Q	PRO 2	ARG 101
R	LYS 21	LYS 88
S	PRO 2	ARG 81
T	ARG 8	GLY 101
V	GLY 2	LYS 25

There are 84 helices in PDB entry 2ZM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	25	30	Right-handed 310
Helix 2	2	B	43	65	Right-handed alpha
Helix 3	3	B	76	88	Right-handed alpha
Helix 4	4	B	104	122	Right-handed alpha
Helix 5	5	B	131	153	Right-handed alpha
Helix 6	6	B	166	180	Right-handed alpha
Helix 7	7	B	193	197	Right-handed 310
Helix 8	8	B	207	227	Right-handed alpha
Helix 9	9	C	6	12	Right-handed alpha
Helix 10	10	C	28	47	Right-handed alpha
Helix 11	11	C	72	77	Right-handed alpha
Helix 12	12	C	82	93	Right-handed alpha
Helix 13	13	C	112	126	Right-handed alpha
Helix 14	14	C	129	145	Right-handed alpha
Helix 15	15	C	156	160	Right-handed 310
Helix 16	16	D	11	16	Right-handed alpha
Helix 17	17	D	52	69	Right-handed alpha
Helix 18	18	D	71	84	Right-handed alpha
Helix 19	19	D	90	100	Right-handed alpha
Helix 20	20	D	100	109	Right-handed alpha
Helix 21	21	D	113	123	Right-handed alpha
Helix 22	22	D	155	166	Right-handed alpha
Helix 23	23	D	178	181	Right-handed 310
Helix 24	24	D	190	194	Right-handed 310
Helix 25	25	D	199	207	Right-handed alpha
Helix 26	26	E	50	63	Right-handed alpha
Helix 27	27	E	71	75	Right-handed 310
Helix 28	28	E	103	113	Right-handed alpha
Helix 29	29	E	127	142	Right-handed alpha
Helix 30	30	E	144	152	Right-handed alpha
Helix 31	31	F	15	33	Right-handed alpha
Helix 32	32	F	68	70	Right-handed 310
Helix 33	33	F	71	80	Right-handed alpha
Helix 34	34	G	20	31	Right-handed alpha
Helix 35	35	G	35	54	Right-handed alpha
Helix 36	36	G	57	70	Right-handed alpha
Helix 37	37	G	92	109	Right-handed alpha
Helix 38	38	G	115	129	Right-handed alpha
Helix 39	39	G	135	146	Right-handed alpha
Helix 40	40	G	148	152	Right-handed 310
Helix 41	41	H	4	18	Right-handed alpha
Helix 42	42	H	29	43	Right-handed alpha
Helix 43	43	H	121	128	Right-handed alpha
Helix 44	44	I	33	37	Right-handed alpha
Helix 45	45	I	40	46	Right-handed 310
Helix 46	46	I	47	52	Right-handed alpha
Helix 47	47	I	69	89	Right-handed alpha
Helix 48	48	I	92	97	Right-handed alpha
Helix 49	49	J	12	29	Right-handed alpha
Helix 50	50	J	80	85	Right-handed alpha
Helix 51	51	K	52	56	Right-handed 310
Helix 52	52	K	57	71	Right-handed alpha
Helix 53	53	K	72	76	Right-handed 310
Helix 54	54	K	90	99	Right-handed alpha
Helix 55	55	L	6	13	Right-handed alpha
Helix 56	56	L	118	122	Right-handed 310
Helix 57	57	M	14	20	Right-handed alpha
Helix 58	58	M	30	34	Right-handed 310
Helix 59	59	M	49	62	Right-handed alpha
Helix 60	60	M	66	84	Right-handed alpha
Helix 61	61	M	86	94	Right-handed alpha
Helix 62	62	M	107	111	Right-handed 310
Helix 63	63	N	3	5	Right-handed 310
Helix 64	64	N	6	12	Right-handed alpha
Helix 65	65	N	16	20	Right-handed 310
Helix 66	66	N	40	51	Right-handed alpha
Helix 67	67	O	4	16	Right-handed alpha
Helix 68	68	O	24	45	Right-handed alpha
Helix 69	69	O	51	73	Right-handed alpha
Helix 70	70	O	74	86	Right-handed alpha
Helix 71	71	P	52	63	Right-handed alpha
Helix 72	72	P	67	78	Right-handed alpha
Helix 73	73	Q	81	96	Right-handed alpha
Helix 74	74	R	36	41	Right-handed alpha
Helix 75	75	R	42	44	Right-handed 310
Helix 76	76	R	52	57	Right-handed alpha
Helix 77	77	R	59	76	Right-handed alpha
Helix 78	78	S	12	20	Right-handed alpha
Helix 79	79	S	21	23	Right-handed 310
Helix 80	80	S	71	75	Right-handed 310
Helix 81	81	T	13	47	Right-handed alpha
Helix 82	82	T	48	69	Right-handed alpha
Helix 83	83	T	74	90	Right-handed alpha
Helix 84	84	V	8	16	Right-handed alpha

There are 26 sheets in PDB entry 2ZM6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	40	42	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	68	71	parallel
Strand 3	B	161	164	parallel
Strand 4	B	184	186	parallel
Strand 5	B	199	200	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	64	70	anti-parallel
Strand 3	C	100	105	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	171	first strand
Strand 2	C	148	152	anti-parallel
Strand 3	C	199	202	anti-parallel
Strand 4	C	183	184	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	194	196	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	126	128	anti-parallel
Strand 3	D	146	148	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	177	first strand
Strand 2	D	182	185	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	17	first strand
Strand 2	E	26	35	anti-parallel
Strand 3	E	41	48	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	84	first strand
Strand 2	E	87	91	anti-parallel
Strand 3	E	122	124	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	118	119	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	52	first strand
Strand 2	F	55	65	anti-parallel
Strand 3	F	4	10	anti-parallel
Strand 4	F	85	92	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	R	29	30	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	76	first strand
Strand 2	G	87	90	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	56	62	anti-parallel
Strand 3	H	47	53	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	85	first strand
Strand 2	H	132	138	anti-parallel
Strand 3	H	109	114	anti-parallel
Strand 4	H	117	120	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	9	first strand
Strand 2	I	13	16	anti-parallel
Strand 3	I	60	67	anti-parallel
Strand 4	I	19	20	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	9	first strand
Strand 2	I	13	16	anti-parallel
Strand 3	I	60	67	anti-parallel
Strand 4	I	25	28	parallel
Strand 5	I	31	32	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	67	74	anti-parallel
Strand 3	J	42	43	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	67	74	anti-parallel
Strand 3	J	4	10	anti-parallel
Strand 4	J	94	99	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	47	49	first strand
Strand 2	J	61	65	anti-parallel
Strand 3	N	56	58	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	38	41	first strand
Strand 2	K	29	34	anti-parallel
Strand 3	K	17	22	anti-parallel
Strand 4	K	79	85	parallel
Strand 5	K	104	110	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	53	60	anti-parallel
Strand 3	L	34	37	anti-parallel
Strand 4	L	82	84	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	53	60	anti-parallel
Strand 3	L	65	69	anti-parallel
Strand 4	L	98	99	parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	5	first strand
Strand 2	P	20	23	anti-parallel
Strand 3	P	34	35	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	35	45	first strand
Strand 2	Q	18	28	anti-parallel
Strand 3	Q	5	12	anti-parallel
Strand 4	Q	56	66	anti-parallel
Strand 5	Q	69	78	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	32	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ZM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZM6