Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZPN entry

There are 8 chains in PDB entry 2ZPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 111
B
 THR 4GLU 112
C
 THR 4GLY 111
D
 THR 4GLU 112
E
 TRP 1LEU 4
F
 TRP 1LEU 4
G
 TRP 1LEU 4
H
 TRP 1LEU 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2ZPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
56 68Right-handed alpha
Helix 3
3
A
90 99Right-handed alpha
Helix 4
4
B
4 9Right-handed alpha
Helix 5
5
B
10 25Right-handed alpha
Helix 6
6
B
56 68Right-handed alpha
Helix 7
7
B
90 99Right-handed alpha
Helix 8
8
C
4 9Right-handed alpha
Helix 9
9
C
10 25Right-handed alpha
Helix 10
10
C
56 68Right-handed alpha
Helix 11
11
C
90 99Right-handed alpha
Helix 12
12
D
4 9Right-handed alpha
Helix 13
13
D
10 25Right-handed alpha
Helix 14
14
D
56 68Right-handed alpha
Helix 15
15
D
90 99Right-handed alpha
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There are 4 sheets in PDB entry 2ZPN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
28 35parallel
Strand 4
A
48 52anti-parallel
Strand 5
E
2 3parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
28 35parallel
Strand 4
B
48 52anti-parallel
Strand 5
F
2 3parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 79first strand
Strand 2
C
105 110anti-parallel
Strand 3
C
28 35parallel
Strand 4
C
48 52anti-parallel
Strand 5
G
2 3parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 79first strand
Strand 2
D
105 110anti-parallel
Strand 3
D
28 35parallel
Strand 4
D
48 52anti-parallel
Strand 5
H
2 3parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il