Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZVV entry

There are 4 chains in PDB entry 2ZVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 255
B
 MET 1GLU 256
Y
 ARG 142ILE 158
X
 ARG 143SER 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2ZVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
141 153Right-handed alpha
Helix 5
5
A
190 194Right-handed 310
Helix 6
6
A
209 216Right-handed alpha
Helix 7
7
A
217 222Right-handed 310
Helix 8
8
B
8 20Right-handed alpha
Helix 9
9
B
55 57Right-handed 310
Helix 10
10
B
72 80Right-handed alpha
Helix 11
11
B
141 153Right-handed alpha
Helix 12
12
B
190 194Right-handed 310
Helix 13
13
B
209 216Right-handed alpha
Helix 14
14
B
217 222Right-handed 310
Helix 15
15
Y
146 150Right-handed 310
Helix 16
16
X
146 150Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 2ZVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
111 117anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
A
245 251anti-parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
224 229anti-parallel
Strand 8
A
135 140anti-parallel
Strand 9
A
196 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
B
120 121parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 182first strand
Strand 2
A
166 173anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
203 208anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
98 104anti-parallel
Strand 5
B
111 117anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
46 53anti-parallel
Strand 5
B
245 251anti-parallel
Strand 6
B
235 241anti-parallel
Strand 7
B
224 229anti-parallel
Strand 8
B
135 140anti-parallel
Strand 9
B
196 199anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 182first strand
Strand 2
B
166 173anti-parallel
Strand 3
B
157 163anti-parallel
Strand 4
B
203 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 255first strand
Strand 2
Y
143 144anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il