Analysis of interatomic Contacts of Structural Units in PDB entry:
3AEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AEV entry

There are 3 chains in PDB entry 3AEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7PRO 174
B
 ASP 26LEU 208
C
 G 1 C 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3AEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 46Right-handed 310
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
86 115Right-handed alpha
Helix 4
4
A
117 125Right-handed alpha
Helix 5
5
A
125 134Right-handed alpha
Helix 6
6
A
135 147Right-handed alpha
Helix 7
7
A
148 152Right-handed 310
Helix 8
8
A
156 158Right-handed 310
Helix 9
9
A
159 171Right-handed alpha
Helix 10
10
B
26 32Right-handed alpha
Helix 11
11
B
41 43Right-handed 310
Helix 12
12
B
44 50Right-handed alpha
Helix 13
13
B
53 64Right-handed alpha
Helix 14
14
B
88 102Right-handed alpha
Helix 15
15
B
105 110Right-handed alpha
Helix 16
16
B
111 114Right-handed 310
Helix 17
17
B
125 127Right-handed 310
Helix 18
18
B
135 145Right-handed alpha
Helix 19
19
B
148 159Right-handed alpha
Helix 20
20
B
174 190Right-handed alpha
Helix 21
21
B
193 207Right-handed alpha
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There are 3 sheets in PDB entry 3AEV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 23first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
77 81parallel
Strand 5
A
63 72anti-parallel
Strand 6
A
14 23anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
75 79anti-parallel
Strand 3
B
66 69anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 123first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
161 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il