Analysis of interatomic Contacts of Structural Units in PDB entry:
3AJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AJY entry

There are 2 chains in PDB entry 3AJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLU 134
C
 GLY 137GLU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3AJY

There are 5 sheets in PDB entry 3AJY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
54 64anti-parallel
Strand 3
A
40 51anti-parallel
Strand 4
A
29 37anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
C
139 141parallel
Strand 7
A
4 6anti-parallel
Strand 8
C
254 259parallel
Strand 9
C
164 172anti-parallel
Strand 10
C
175 186anti-parallel
Strand 11
C
189 199anti-parallel
Strand 12
C
202 203anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
54 64anti-parallel
Strand 3
A
40 51anti-parallel
Strand 4
A
29 37anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
C
139 141parallel
Strand 7
A
4 6anti-parallel
Strand 8
C
254 259parallel
Strand 9
C
164 172anti-parallel
Strand 10
C
175 186anti-parallel
Strand 11
C
189 199anti-parallel
Strand 12
C
207 209anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
116 117anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
17 23anti-parallel
Strand 5
A
126 133anti-parallel
Strand 6
C
261 268anti-parallel
Strand 7
C
152 158anti-parallel
Strand 8
C
219 226anti-parallel
Strand 9
C
230 235anti-parallel
Strand 10
C
240 244anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 147first strand
Strand 2
C
251 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il