Analysis of interatomic Contacts of Structural Units in PDB entry:
3AMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AMK entry

There is 1 chain in PDB entry 3AMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ASP 694
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3AMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
11 17Right-handed alpha
Helix 3
3
A
18 22Right-handed 310
Helix 4
4
A
23 46Right-handed alpha
Helix 5
5
A
47 52Right-handed alpha
Helix 6
6
A
53 57Right-handed 310
Helix 7
7
A
85 87Right-handed 310
Helix 8
8
A
163 167Right-handed 310
Helix 9
9
A
199 207Right-handed alpha
Helix 10
10
A
207 214Right-handed alpha
Helix 11
11
A
229 233Right-handed 310
Helix 12
12
A
245 248Right-handed 310
Helix 13
13
A
249 263Right-handed alpha
Helix 14
14
A
283 288Right-handed 310
Helix 15
15
A
292 296Right-handed 310
Helix 16
16
A
300 303Right-handed 310
Helix 17
17
A
318 337Right-handed alpha
Helix 18
18
A
345 351Right-handed alpha
Helix 19
19
A
363 368Right-handed alpha
Helix 20
20
A
373 391Right-handed alpha
Helix 21
21
A
410 414Right-handed 310
Helix 22
22
A
425 437Right-handed alpha
Helix 23
23
A
438 442Right-handed 310
Helix 24
24
A
443 453Right-handed alpha
Helix 25
25
A
476 483Right-handed alpha
Helix 26
26
A
485 490Right-handed alpha
Helix 27
27
A
497 519Right-handed alpha
Helix 28
28
A
527 531Right-handed 310
Helix 29
29
A
540 544Right-handed 310
Helix 30
30
A
553 559Right-handed alpha
Helix 31
31
A
563 582Right-handed alpha
Helix 32
32
A
583 586Right-handed 310
Helix 33
33
A
641 645Right-handed 310
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There are 8 sheets in PDB entry 3AMK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
96 97anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
122 127anti-parallel
Strand 3
A
134 136anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
155 157anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 461first strand
Strand 2
A
420 422parallel
Strand 3
A
395 398parallel
Strand 4
A
340 343parallel
Strand 5
A
266 271parallel
Strand 6
A
218 221parallel
Strand 7
A
182 186parallel
Strand 8
A
522 525parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
239 243anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
311 312anti-parallel
Strand 3
A
305 306anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 595first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
608 613anti-parallel
Strand 4
A
686 692anti-parallel
Strand 5
A
632 638anti-parallel
Strand 6
A
656 657anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 627first strand
Strand 2
A
676 682anti-parallel
Strand 3
A
659 660anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il