Analysis of interatomic Contacts of Structural Units in PDB entry:
3AMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AMV entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 3AMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ILE 13
A
 VAL 15PRO 835
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3AMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 37Right-handed alpha
Helix 2
2
A
48 76Right-handed alpha
Helix 3
3
A
95 102Right-handed alpha
Helix 4
4
A
105 114Right-handed alpha
Helix 5
5
A
119 125Right-handed alpha
Helix 6
6
A
135 149Right-handed alpha
Helix 7
7
A
194 196Right-handed 310
Helix 8
8
A
262 269Right-handed alpha
Helix 9
9
A
273 276Right-handed 310
Helix 10
10
A
290 312Right-handed alpha
Helix 11
11
A
326 332Right-handed 310
Helix 12
12
A
340 355Right-handed 310
Helix 13
13
A
361 371Right-handed alpha
Helix 14
14
A
381 383Right-handed 310
Helix 15
15
A
389 395Right-handed alpha
Helix 16
16
A
397 417Right-handed alpha
Helix 17
17
A
422 428Right-handed alpha
Helix 18
18
A
441 448Right-handed alpha
Helix 19
19
A
457 465Right-handed alpha
Helix 20
20
A
469 474Right-handed alpha
Helix 21
21
A
476 478Right-handed 310
Helix 22
22
A
488 491Right-handed alpha
Helix 23
23
A
497 507Right-handed alpha
Helix 24
24
A
510 512Right-handed 310
Helix 25
25
A
515 524Right-handed 310
Helix 26
26
A
528 552Right-handed alpha
Helix 27
27
A
576 592Right-handed alpha
Helix 28
28
A
614 632Right-handed alpha
Helix 29
29
A
650 659Right-handed alpha
Helix 30
30
A
677 684Right-handed alpha
Helix 31
31
A
694 703Right-handed 310
Helix 32
32
A
705 707Right-handed 310
Helix 33
33
A
715 724Right-handed alpha
Helix 34
34
A
728 734Right-handed 310
Helix 35
35
A
736 747Right-handed alpha
Helix 36
36
A
755 767Right-handed 310
Helix 37
37
A
773 792Right-handed 310
Helix 38
38
A
794 807Right-handed alpha
Helix 39
39
A
809 811Right-handed 310
Helix 40
40
A
813 823Right-handed alpha
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There are 8 sheets in PDB entry 3AMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
221 231anti-parallel
Strand 3
A
238 248anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
81 85parallel
Strand 6
A
333 338parallel
Strand 7
A
372 375parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
219 223anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
213 216anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
438 440anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
479 481parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 567first strand
Strand 2
A
601 606parallel
Strand 3
A
640 644parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 665first strand
Strand 2
A
687 690parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il