Analysis of interatomic Contacts of Structural Units in PDB entry:
3AMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AMY entry

There is 1 chain in PDB entry 3AMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 2VAL 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3AMY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
74 89Right-handed alpha
Helix 3
3
A
122 128Right-handed alpha
Helix 4
4
A
129 150Right-handed alpha
Helix 5
5
A
158 160Right-handed 310
Helix 6
6
A
166 169Right-handed 310
Helix 7
7
A
194 198Right-handed 310
Helix 8
8
A
199 204Right-handed alpha
Helix 9
9
A
211 227Right-handed alpha
Helix 10
10
A
237 250Right-handed alpha
Helix 11
11
A
251 261Right-handed alpha
Helix 12
12
A
268 274Right-handed alpha
Helix 13
13
A
280 285Right-handed 310
Helix 14
14
A
289 293Right-handed 310
Helix 15
15
A
294 305Right-handed alpha
Helix 16
16
A
308 312Right-handed 310
Helix 17
17
A
314 320Right-handed alpha
Helix 18
18
A
321 325Right-handed 310
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There are 3 sheets in PDB entry 3AMY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 35first strand
Strand 2
A
97 102parallel
Strand 3
A
110 114anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
53 58anti-parallel
Strand 6
A
39 44anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 153first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il