Analysis of interatomic Contacts of Structural Units in PDB entry:
3B60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B60 entry

There are 4 chains in PDB entry 3B60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 10GLY 581
B
 TRP 10GLY 581
C
 TRP 10GLY 581
D
 TRP 10GLY 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 3B60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
23 49Right-handed alpha
Helix 3
3
A
49 54Right-handed alpha
Helix 4
4
A
60 67Right-handed alpha
Helix 5
5
A
67 110Right-handed alpha
Helix 6
6
A
114 119Right-handed alpha
Helix 7
7
A
120 164Right-handed alpha
Helix 8
8
A
167 213Right-handed alpha
Helix 9
9
A
213 221Right-handed alpha
Helix 10
10
A
222 272Right-handed alpha
Helix 11
11
A
279 324Right-handed alpha
Helix 12
12
A
381 390Right-handed alpha
Helix 13
13
A
411 418Right-handed alpha
Helix 14
14
A
432 439Right-handed alpha
Helix 15
15
A
446 456Right-handed alpha
Helix 16
16
A
459 466Right-handed alpha
Helix 17
17
A
468 472Right-handed 310
Helix 18
18
A
482 498Right-handed alpha
Helix 19
19
A
512 528Right-handed alpha
Helix 20
20
A
538 542Right-handed 310
Helix 21
21
A
561 569Right-handed alpha
Helix 22
22
A
571 579Right-handed alpha
Helix 23
23
B
10 21Right-handed alpha
Helix 24
24
B
23 49Right-handed alpha
Helix 25
25
B
49 54Right-handed alpha
Helix 26
26
B
60 67Right-handed alpha
Helix 27
27
B
67 110Right-handed alpha
Helix 28
28
B
114 119Right-handed alpha
Helix 29
29
B
120 164Right-handed alpha
Helix 30
30
B
167 213Right-handed alpha
Helix 31
31
B
213 221Right-handed alpha
Helix 32
32
B
222 272Right-handed alpha
Helix 33
33
B
273 277Right-handed 310
Helix 34
34
B
279 324Right-handed alpha
Helix 35
35
B
381 390Right-handed alpha
Helix 36
36
B
411 418Right-handed alpha
Helix 37
37
B
432 439Right-handed alpha
Helix 38
38
B
446 456Right-handed alpha
Helix 39
39
B
459 466Right-handed alpha
Helix 40
40
B
468 472Right-handed 310
Helix 41
41
B
482 498Right-handed alpha
Helix 42
42
B
512 528Right-handed alpha
Helix 43
43
B
538 542Right-handed 310
Helix 44
44
B
561 569Right-handed alpha
Helix 45
45
B
571 579Right-handed alpha
Helix 46
46
C
10 21Right-handed alpha
Helix 47
47
C
23 49Right-handed alpha
Helix 48
48
C
49 54Right-handed alpha
Helix 49
49
C
60 67Right-handed alpha
Helix 50
50
C
67 110Right-handed alpha
Helix 51
51
C
114 119Right-handed alpha
Helix 52
52
C
120 164Right-handed alpha
Helix 53
53
C
167 213Right-handed alpha
Helix 54
54
C
213 221Right-handed alpha
Helix 55
55
C
222 272Right-handed alpha
Helix 56
56
C
273 277Right-handed 310
Helix 57
57
C
279 324Right-handed alpha
Helix 58
58
C
381 390Right-handed alpha
Helix 59
59
C
411 418Right-handed alpha
Helix 60
60
C
432 439Right-handed alpha
Helix 61
61
C
446 456Right-handed alpha
Helix 62
62
C
459 466Right-handed alpha
Helix 63
63
C
468 472Right-handed 310
Helix 64
64
C
482 498Right-handed alpha
Helix 65
65
C
512 528Right-handed alpha
Helix 66
66
C
538 542Right-handed 310
Helix 67
67
C
561 569Right-handed alpha
Helix 68
68
C
571 579Right-handed alpha
Helix 69
69
D
10 21Right-handed alpha
Helix 70
70
D
23 49Right-handed alpha
Helix 71
71
D
49 54Right-handed alpha
Helix 72
72
D
60 67Right-handed alpha
Helix 73
73
D
67 110Right-handed alpha
Helix 74
74
D
114 119Right-handed alpha
Helix 75
75
D
120 164Right-handed alpha
Helix 76
76
D
167 213Right-handed alpha
Helix 77
77
D
213 221Right-handed alpha
Helix 78
78
D
222 272Right-handed alpha
Helix 79
79
D
273 277Right-handed 310
Helix 80
80
D
279 324Right-handed alpha
Helix 81
81
D
381 390Right-handed alpha
Helix 82
82
D
411 418Right-handed alpha
Helix 83
83
D
432 439Right-handed alpha
Helix 84
84
D
446 456Right-handed alpha
Helix 85
85
D
459 466Right-handed alpha
Helix 86
86
D
468 472Right-handed 310
Helix 87
87
D
482 498Right-handed alpha
Helix 88
88
D
512 528Right-handed alpha
Helix 89
89
D
538 542Right-handed 310
Helix 90
90
D
561 569Right-handed alpha
Helix 91
91
D
571 579Right-handed alpha
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There are 8 sheets in PDB entry 3B60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 366first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
397 402anti-parallel
Strand 4
A
405 406anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
501 505parallel
Strand 3
A
531 535parallel
Strand 4
A
371 376parallel
Strand 5
A
547 552parallel
Strand 6
A
555 560anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 366first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
405 406anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 422first strand
Strand 2
B
501 505parallel
Strand 3
B
531 535parallel
Strand 4
B
371 376parallel
Strand 5
B
547 552parallel
Strand 6
B
555 560anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
359 366first strand
Strand 2
C
342 349anti-parallel
Strand 3
C
397 402anti-parallel
Strand 4
C
405 406anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
419 422first strand
Strand 2
C
501 505parallel
Strand 3
C
531 535parallel
Strand 4
C
371 376parallel
Strand 5
C
547 552parallel
Strand 6
C
555 560anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
359 366first strand
Strand 2
D
342 349anti-parallel
Strand 3
D
397 402anti-parallel
Strand 4
D
405 406anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
419 422first strand
Strand 2
D
501 505parallel
Strand 3
D
531 535parallel
Strand 4
D
371 376parallel
Strand 5
D
547 552parallel
Strand 6
D
555 560anti-parallel
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