Analysis of interatomic Contacts of Structural Units in PDB entry:
3B76


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B76 entry

There are 2 chains in PDB entry 3B76 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 402VAL 502
B
 ASN 401VAL 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3B76. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
448 454Right-handed alpha
Helix 2
2
A
471 473Right-handed 310
Helix 3
3
A
474 484Right-handed alpha
Helix 4
4
B
448 454Right-handed alpha
Helix 5
5
B
471 473Right-handed 310
Helix 6
6
B
474 484Right-handed alpha
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There are 5 sheets in PDB entry 3B76. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 415first strand
Strand 2
A
488 498anti-parallel
Strand 3
A
461 465anti-parallel
Strand 4
A
468 469anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 415first strand
Strand 2
A
488 498anti-parallel
Strand 3
A
461 465anti-parallel
Strand 4
A
439 444anti-parallel
Strand 5
A
424 428anti-parallel
Strand 6
B
500 502anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 502first strand
Strand 2
B
424 427anti-parallel
Strand 3
B
440 444anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 415first strand
Strand 2
B
488 498anti-parallel
Strand 3
B
461 465anti-parallel
Strand 4
B
468 469anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 432first strand
Strand 2
B
435 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il