Analysis of interatomic Contacts of Structural Units in PDB entry:
3B7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B7W entry

There is 1 chain in PDB entry 3B7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 33LYS 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3B7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed alpha
Helix 2
2
A
50 60Right-handed alpha
Helix 3
3
A
83 99Right-handed alpha
Helix 4
4
A
116 130Right-handed alpha
Helix 5
5
A
141 153Right-handed alpha
Helix 6
6
A
163 171Right-handed alpha
Helix 7
7
A
172 174Right-handed 310
Helix 8
8
A
194 201Right-handed alpha
Helix 9
9
A
235 246Right-handed alpha
Helix 10
10
A
265 272Right-handed alpha
Helix 11
11
A
273 280Right-handed alpha
Helix 12
12
A
292 303Right-handed alpha
Helix 13
13
A
311 320Right-handed alpha
Helix 14
14
A
342 354Right-handed alpha
Helix 15
15
A
429 436Right-handed alpha
Helix 16
16
A
474 484Right-handed alpha
Helix 17
17
A
513 516Right-handed 310
Helix 18
18
A
519 535Right-handed alpha
Helix 19
19
A
536 540Right-handed 310
Helix 20
20
A
559 568Right-handed alpha
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There are 7 sheets in PDB entry 3B7W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
282 286parallel
Strand 4
A
256 259parallel
Strand 5
A
307 309parallel
Strand 6
A
333 336parallel
Strand 7
A
358 363parallel
Strand 8
A
367 371anti-parallel
Strand 9
A
385 386anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
108 112parallel
Strand 3
A
156 160parallel
Strand 4
A
179 183parallel
Strand 5
A
192 193parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 221first strand
Strand 2
A
229 234anti-parallel
Strand 3
A
425 426anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
441 450anti-parallel
Strand 4
A
437 438anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
441 450anti-parallel
Strand 4
A
456 461anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
471 473anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 498first strand
Strand 2
A
502 511anti-parallel
Strand 3
A
543 546parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il