Analysis of interatomic Contacts of Structural Units in PDB entry:
3BGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BGD entry

There are 2 chains in PDB entry 3BGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 9LYS 240
B
PRO 9LYS 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3BGD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
20 31Right-handed alpha
Helix 3
3
A
41 53Right-handed alpha
Helix 4
4
A
69 76Right-handed alpha
Helix 5
5
A
87 98Right-handed alpha
Helix 6
6
A
132 137Right-handed 310
Helix 7
7
A
154 156Right-handed 310
Helix 8
8
A
157 168Right-handed alpha
Helix 9
9
A
195 204Right-handed alpha
Helix 10
10
A
219 224Right-handed alpha
Helix 11
11
B
9 13Right-handed 310
Helix 12
12
B
20 30Right-handed alpha
Helix 13
13
B
41 52Right-handed alpha
Helix 14
14
B
69 77Right-handed alpha
Helix 15
15
B
87 99Right-handed alpha
Helix 16
16
B
132 137Right-handed 310
Helix 17
17
B
154 156Right-handed 310
Helix 18
18
B
157 168Right-handed alpha
Helix 19
19
B
183 187Right-handed 310
Helix 20
20
B
195 204Right-handed alpha
Helix 21
21
B
219 224Right-handed alpha
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There are 2 sheets in PDB entry 3BGD. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 106first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
80 84parallel
Strand 5
A
59 62parallel
Strand 6
A
141 147parallel
Strand 7
A
169 181parallel
Strand 8
A
231 238anti-parallel
Strand 9
A
208 216anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 106first strand
Strand 2
B
114 118anti-parallel
Strand 3
B
123 127anti-parallel
Strand 4
B
80 84parallel
Strand 5
B
59 62parallel
Strand 6
B
141 146parallel
Strand 7
B
169 181parallel
Strand 8
B
231 239anti-parallel
Strand 9
B
207 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il