Analysis of interatomic Contacts of Structural Units in PDB entry:
3BIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BIM entry

There are 16 chains in PDB entry 3BIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLU 129
I
 ARG 498PRO 514
B
 ALA 5SER 128
J
 ARG 498PRO 514
C
 ALA 5GLU 129
K
 ARG 498PRO 514
D
 ALA 5SER 128
L
 SER 499PRO 514
E
 ASP 6SER 128
M
 ARG 498PRO 514
F
 ALA 5LYS 126
N
 SER 499PRO 514
G
 SER 7SER 128
O
 ARG 498PRO 514
H
 ASP 6ALA 127
P
 ARG 498PRO 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3BIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 29Right-handed alpha
Helix 2
2
A
46 54Right-handed alpha
Helix 3
3
A
54 63Right-handed alpha
Helix 4
4
A
79 93Right-handed alpha
Helix 5
5
A
101 113Right-handed alpha
Helix 6
6
A
114 123Right-handed alpha
Helix 7
7
B
13 28Right-handed alpha
Helix 8
8
B
46 54Right-handed alpha
Helix 9
9
B
54 62Right-handed alpha
Helix 10
10
B
79 93Right-handed alpha
Helix 11
11
B
101 112Right-handed alpha
Helix 12
12
B
114 123Right-handed alpha
Helix 13
13
C
13 28Right-handed alpha
Helix 14
14
C
46 54Right-handed alpha
Helix 15
15
C
54 62Right-handed alpha
Helix 16
16
C
79 93Right-handed alpha
Helix 17
17
C
101 112Right-handed alpha
Helix 18
18
C
114 123Right-handed alpha
Helix 19
19
D
13 28Right-handed alpha
Helix 20
20
D
46 54Right-handed alpha
Helix 21
21
D
54 63Right-handed alpha
Helix 22
22
D
79 93Right-handed alpha
Helix 23
23
D
101 112Right-handed alpha
Helix 24
24
D
114 124Right-handed alpha
Helix 25
25
E
13 28Right-handed alpha
Helix 26
26
E
46 54Right-handed alpha
Helix 27
27
E
54 63Right-handed alpha
Helix 28
28
E
79 91Right-handed alpha
Helix 29
29
E
101 112Right-handed alpha
Helix 30
30
E
114 123Right-handed alpha
Helix 31
31
F
13 28Right-handed alpha
Helix 32
32
F
46 54Right-handed alpha
Helix 33
33
F
54 63Right-handed alpha
Helix 34
34
F
79 93Right-handed alpha
Helix 35
35
F
101 113Right-handed alpha
Helix 36
36
F
114 123Right-handed alpha
Helix 37
37
G
13 28Right-handed alpha
Helix 38
38
G
46 54Right-handed alpha
Helix 39
39
G
54 63Right-handed alpha
Helix 40
40
G
79 93Right-handed alpha
Helix 41
41
G
101 112Right-handed alpha
Helix 42
42
G
114 125Right-handed alpha
Helix 43
43
H
13 28Right-handed alpha
Helix 44
44
H
46 54Right-handed alpha
Helix 45
45
H
54 62Right-handed alpha
Helix 46
46
H
79 93Right-handed alpha
Helix 47
47
H
101 112Right-handed alpha
Helix 48
48
H
114 124Right-handed alpha
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There are 16 sheets in PDB entry 3BIM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
A
7 11anti-parallel
Strand 3
J
499 503parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
71 73parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
B
8 11anti-parallel
Strand 3
I
500 503parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
71 73parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 97first strand
Strand 2
C
7 11anti-parallel
Strand 3
L
500 503parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 45first strand
Strand 2
C
34 38anti-parallel
Strand 3
C
71 73parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
D
8 11anti-parallel
Strand 3
K
500 503parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 45first strand
Strand 2
D
34 38anti-parallel
Strand 3
D
71 73parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
94 97first strand
Strand 2
E
7 11anti-parallel
Strand 3
N
500 503parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 45first strand
Strand 2
E
34 38anti-parallel
Strand 3
E
71 73parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 95first strand
Strand 2
F
9 11anti-parallel
Strand 3
M
501 503parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 45first strand
Strand 2
F
34 38anti-parallel
Strand 3
F
71 73parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
94 95first strand
Strand 2
G
8 11anti-parallel
Strand 3
P
500 503parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
41 45first strand
Strand 2
G
34 38anti-parallel
Strand 3
G
71 73parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
94 97first strand
Strand 2
H
7 11anti-parallel
Strand 3
O
500 503parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
41 45first strand
Strand 2
H
34 38anti-parallel
Strand 3
H
71 74parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il