Analysis of interatomic Contacts of Structural Units in PDB entry:
3BJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BJI entry

There are 4 chains in PDB entry 3BJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 189GLY 565
B
 MET 189GLY 566
C
 MET 1LEU 177
D
 ALA 3VAL 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3BJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
190 219Right-handed alpha
Helix 2
2
A
220 225Right-handed alpha
Helix 3
3
A
229 238Right-handed alpha
Helix 4
4
A
239 260Right-handed alpha
Helix 5
5
A
266 274Right-handed alpha
Helix 6
6
A
275 277Right-handed 310
Helix 7
7
A
278 301Right-handed alpha
Helix 8
8
A
301 317Right-handed alpha
Helix 9
9
A
321 327Right-handed alpha
Helix 10
10
A
327 334Right-handed alpha
Helix 11
11
A
335 345Right-handed alpha
Helix 12
12
A
350 389Right-handed alpha
Helix 13
13
A
396 401Right-handed 310
Helix 14
14
A
488 507Right-handed alpha
Helix 15
15
A
512 516Right-handed 310
Helix 16
16
A
554 561Right-handed 310
Helix 17
17
B
190 220Right-handed alpha
Helix 18
18
B
220 225Right-handed alpha
Helix 19
19
B
229 238Right-handed alpha
Helix 20
20
B
239 259Right-handed alpha
Helix 21
21
B
265 274Right-handed alpha
Helix 22
22
B
275 277Right-handed 310
Helix 23
23
B
278 301Right-handed alpha
Helix 24
24
B
301 312Right-handed alpha
Helix 25
25
B
313 315Right-handed 310
Helix 26
26
B
321 326Right-handed alpha
Helix 27
27
B
327 334Right-handed alpha
Helix 28
28
B
335 346Right-handed alpha
Helix 29
29
B
349 390Right-handed alpha
Helix 30
30
B
396 401Right-handed 310
Helix 31
31
B
488 505Right-handed alpha
Helix 32
32
B
512 516Right-handed 310
Helix 33
33
B
554 558Right-handed 310
Helix 34
34
C
15 26Right-handed alpha
Helix 35
35
C
67 72Right-handed 310
Helix 36
36
C
86 96Right-handed alpha
Helix 37
37
C
96 105Right-handed alpha
Helix 38
38
C
116 120Right-handed 310
Helix 39
39
C
122 130Right-handed alpha
Helix 40
40
C
138 149Right-handed alpha
Helix 41
41
C
164 177Right-handed alpha
Helix 42
42
D
15 26Right-handed alpha
Helix 43
43
D
67 72Right-handed 310
Helix 44
44
D
87 96Right-handed alpha
Helix 45
45
D
96 105Right-handed alpha
Helix 46
46
D
138 149Right-handed alpha
Helix 47
47
D
164 176Right-handed alpha
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There are 6 sheets in PDB entry 3BJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 448first strand
Strand 2
A
430 435anti-parallel
Strand 3
A
420 427anti-parallel
Strand 4
A
403 412anti-parallel
Strand 5
A
481 486anti-parallel
Strand 6
A
469 475anti-parallel
Strand 7
A
452 456anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
543 546anti-parallel
Strand 3
A
552 553anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 448first strand
Strand 2
B
430 436anti-parallel
Strand 3
B
420 427anti-parallel
Strand 4
B
403 412anti-parallel
Strand 5
B
482 486anti-parallel
Strand 6
B
469 474anti-parallel
Strand 7
B
453 456anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 521first strand
Strand 2
B
543 546anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 46first strand
Strand 2
C
49 56anti-parallel
Strand 3
C
4 10parallel
Strand 4
C
77 83parallel
Strand 5
C
110 115parallel
Strand 6
C
153 156parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 44first strand
Strand 2
D
51 56anti-parallel
Strand 3
D
5 9parallel
Strand 4
D
77 83parallel
Strand 5
D
110 115parallel
Strand 6
D
153 157parallel
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