Analysis of interatomic Contacts of Structural Units in PDB entry:
3BMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BMA entry

There are 6 chains in PDB entry 3BMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 35PHE 426
B
 MET 35GLN 427
C
 MET 35GLU 428
D
 MET 35PHE 426
E
 MET 35GLU 425
F
 MET 35VAL 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are138 helices in PDB entry 3BMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 47Right-handed alpha
Helix 2
2
A
50 56Right-handed alpha
Helix 3
3
A
56 65Right-handed alpha
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
110 119Right-handed alpha
Helix 6
6
A
121 126Right-handed alpha
Helix 7
7
A
135 139Right-handed 310
Helix 8
8
A
145 150Right-handed alpha
Helix 9
9
A
154 165Right-handed alpha
Helix 10
10
A
168 182Right-handed alpha
Helix 11
11
A
187 196Right-handed alpha
Helix 12
12
A
201 223Right-handed alpha
Helix 13
13
A
231 237Right-handed alpha
Helix 14
14
A
249 264Right-handed alpha
Helix 15
15
A
273 281Right-handed alpha
Helix 16
16
A
284 289Right-handed alpha
Helix 17
17
A
301 316Right-handed alpha
Helix 18
18
A
328 335Right-handed alpha
Helix 19
19
A
338 355Right-handed alpha
Helix 20
20
A
383 398Right-handed alpha
Helix 21
21
A
408 412Right-handed 310
Helix 22
22
A
413 418Right-handed alpha
Helix 23
23
B
38 49Right-handed alpha
Helix 24
24
B
50 56Right-handed alpha
Helix 25
25
B
56 65Right-handed alpha
Helix 26
26
B
87 95Right-handed alpha
Helix 27
27
B
110 119Right-handed alpha
Helix 28
28
B
121 126Right-handed alpha
Helix 29
29
B
135 139Right-handed 310
Helix 30
30
B
145 150Right-handed alpha
Helix 31
31
B
154 165Right-handed alpha
Helix 32
32
B
168 182Right-handed alpha
Helix 33
33
B
187 196Right-handed alpha
Helix 34
34
B
201 223Right-handed alpha
Helix 35
35
B
224 226Right-handed 310
Helix 36
36
B
231 237Right-handed alpha
Helix 37
37
B
249 265Right-handed alpha
Helix 38
38
B
273 281Right-handed alpha
Helix 39
39
B
285 289Right-handed 310
Helix 40
40
B
301 316Right-handed alpha
Helix 41
41
B
328 335Right-handed alpha
Helix 42
42
B
338 355Right-handed alpha
Helix 43
43
B
382 398Right-handed alpha
Helix 44
44
B
408 412Right-handed 310
Helix 45
45
B
413 418Right-handed alpha
Helix 46
46
B
422 427Right-handed 310
Helix 47
47
C
38 47Right-handed alpha
Helix 48
48
C
50 56Right-handed alpha
Helix 49
49
C
56 65Right-handed alpha
Helix 50
50
C
87 95Right-handed alpha
Helix 51
51
C
110 119Right-handed alpha
Helix 52
52
C
121 126Right-handed alpha
Helix 53
53
C
135 139Right-handed 310
Helix 54
54
C
145 153Right-handed alpha
Helix 55
55
C
154 165Right-handed alpha
Helix 56
56
C
168 182Right-handed alpha
Helix 57
57
C
187 196Right-handed alpha
Helix 58
58
C
201 223Right-handed alpha
Helix 59
59
C
229 237Right-handed alpha
Helix 60
60
C
249 264Right-handed alpha
Helix 61
61
C
273 281Right-handed alpha
Helix 62
62
C
301 316Right-handed alpha
Helix 63
63
C
328 336Right-handed alpha
Helix 64
64
C
338 355Right-handed alpha
Helix 65
65
C
382 398Right-handed alpha
Helix 66
66
C
408 412Right-handed 310
Helix 67
67
C
413 418Right-handed alpha
Helix 68
68
C
422 426Right-handed 310
Helix 69
69
D
38 47Right-handed alpha
Helix 70
70
D
50 56Right-handed alpha
Helix 71
71
D
56 65Right-handed alpha
Helix 72
72
D
77 81Right-handed 310
Helix 73
73
D
87 95Right-handed alpha
Helix 74
74
D
110 119Right-handed alpha
Helix 75
75
D
121 126Right-handed alpha
Helix 76
76
D
135 139Right-handed 310
Helix 77
77
D
145 153Right-handed alpha
Helix 78
78
D
154 165Right-handed alpha
Helix 79
79
D
168 182Right-handed alpha
Helix 80
80
D
187 196Right-handed alpha
Helix 81
81
D
201 220Right-handed alpha
Helix 82
82
D
229 237Right-handed alpha
Helix 83
83
D
237 242Right-handed alpha
Helix 84
84
D
249 265Right-handed alpha
Helix 85
85
D
273 281Right-handed alpha
Helix 86
86
D
284 289Right-handed alpha
Helix 87
87
D
301 316Right-handed alpha
Helix 88
88
D
328 335Right-handed alpha
Helix 89
89
D
338 355Right-handed alpha
Helix 90
90
D
382 398Right-handed alpha
Helix 91
91
D
408 412Right-handed 310
Helix 92
92
D
413 418Right-handed alpha
Helix 93
93
E
38 49Right-handed alpha
Helix 94
94
E
50 56Right-handed alpha
Helix 95
95
E
56 65Right-handed alpha
Helix 96
96
E
87 95Right-handed alpha
Helix 97
97
E
110 119Right-handed alpha
Helix 98
98
E
120 125Right-handed 310
Helix 99
99
E
135 139Right-handed 310
Helix 100
100
E
145 153Right-handed alpha
Helix 101
101
E
154 165Right-handed alpha
Helix 102
102
E
168 182Right-handed alpha
Helix 103
103
E
187 196Right-handed alpha
Helix 104
104
E
201 223Right-handed alpha
Helix 105
105
E
228 237Right-handed alpha
Helix 106
106
E
237 242Right-handed alpha
Helix 107
107
E
249 265Right-handed alpha
Helix 108
108
E
273 280Right-handed alpha
Helix 109
109
E
290 294Right-handed 310
Helix 110
110
E
301 316Right-handed alpha
Helix 111
111
E
330 335Right-handed alpha
Helix 112
112
E
338 355Right-handed alpha
Helix 113
113
E
382 398Right-handed alpha
Helix 114
114
E
408 412Right-handed 310
Helix 115
115
E
413 418Right-handed alpha
Helix 116
116
F
38 47Right-handed alpha
Helix 117
117
F
50 56Right-handed alpha
Helix 118
118
F
56 64Right-handed alpha
Helix 119
119
F
87 95Right-handed alpha
Helix 120
120
F
110 119Right-handed alpha
Helix 121
121
F
120 125Right-handed 310
Helix 122
122
F
135 139Right-handed 310
Helix 123
123
F
145 153Right-handed alpha
Helix 124
124
F
154 165Right-handed alpha
Helix 125
125
F
168 182Right-handed alpha
Helix 126
126
F
187 196Right-handed alpha
Helix 127
127
F
201 223Right-handed alpha
Helix 128
128
F
229 237Right-handed alpha
Helix 129
129
F
239 244Right-handed alpha
Helix 130
130
F
249 264Right-handed alpha
Helix 131
131
F
273 278Right-handed alpha
Helix 132
132
F
301 317Right-handed alpha
Helix 133
133
F
328 335Right-handed alpha
Helix 134
134
F
338 355Right-handed alpha
Helix 135
135
F
366 370Right-handed 310
Helix 136
136
F
383 398Right-handed alpha
Helix 137
137
F
408 412Right-handed 310
Helix 138
138
F
413 418Right-handed alpha
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There are 6 sheets in PDB entry 3BMA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
71 75parallel
Strand 3
A
129 133parallel
Strand 4
A
319 324parallel
Strand 5
A
361 363parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
71 75parallel
Strand 3
B
129 133parallel
Strand 4
B
319 324parallel
Strand 5
B
361 363parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 104first strand
Strand 2
C
71 75parallel
Strand 3
C
129 133parallel
Strand 4
C
319 324parallel
Strand 5
C
361 363parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 104first strand
Strand 2
D
71 75parallel
Strand 3
D
129 133parallel
Strand 4
D
319 324parallel
Strand 5
D
361 363parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 104first strand
Strand 2
E
71 75parallel
Strand 3
E
129 133parallel
Strand 4
E
319 324parallel
Strand 5
E
361 363parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
100 104first strand
Strand 2
F
71 75parallel
Strand 3
F
129 133parallel
Strand 4
F
319 324parallel
Strand 5
F
361 363parallel
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