Analysis of interatomic Contacts of Structural Units in PDB entry:
3BMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BMW entry

There is 1 chain in PDB entry 3BMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3BMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
66 70Right-handed 310
Helix 6
6
A
115 129Right-handed alpha
Helix 7
7
A
186 193Right-handed alpha
Helix 8
8
A
205 221Right-handed alpha
Helix 9
9
A
231 235Right-handed 310
Helix 10
10
A
236 251Right-handed alpha
Helix 11
11
A
267 277Right-handed alpha
Helix 12
12
A
283 295Right-handed alpha
Helix 13
13
A
300 315Right-handed alpha
Helix 14
14
A
317 320Right-handed 310
Helix 15
15
A
339 352Right-handed alpha
Helix 16
16
A
361 365Right-handed 310
Helix 17
17
A
372 376Right-handed 310
Helix 18
18
A
385 395Right-handed alpha
Helix 19
19
A
396 401Right-handed alpha
Helix 20
20
A
401 407Right-handed alpha
Helix 21
21
A
607 611Right-handed 310
Helix 22
22
A
614 618Right-handed 310
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There are 13 sheets in PDB entry 3BMW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
254 257parallel
Strand 3
A
226 229parallel
Strand 4
A
132 137parallel
Strand 5
A
73 76parallel
Strand 6
A
17 19parallel
Strand 7
A
355 359parallel
Strand 8
A
322 323parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
103 109anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
93 95anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
198 200anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
163 166anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 414first strand
Strand 2
A
418 425anti-parallel
Strand 3
A
428 435anti-parallel
Strand 4
A
487 492anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
480 482anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
469 471anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 505first strand
Strand 2
A
514 520anti-parallel
Strand 3
A
545 549anti-parallel
Strand 4
A
537 541anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
573 578parallel
Strand 3
A
556 563anti-parallel
Strand 4
A
528 531anti-parallel
Strand 5
A
534 535anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 640first strand
Strand 2
A
583 591anti-parallel
Strand 3
A
675 680parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 605first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
657 659anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 605first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
665 668anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il