Analysis of interatomic Contacts of Structural Units in PDB entry:
3BPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BPL entry

There are 3 chains in PDB entry 3BPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 3SER 128
B
ALA -2SER 199
C
PRO 34ASN 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3BPL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 20Right-handed alpha
Helix 2
2
A
40 60Right-handed alpha
Helix 3
3
A
69 95Right-handed alpha
Helix 4
4
A
109 127Right-handed alpha
Helix 5
5
B
28 33Right-handed alpha
Helix 6
6
B
91 95Right-handed 310
Helix 7
7
B
128 132Right-handed 310
Helix 8
8
B
164 166Right-handed 310
Helix 9
9
B
180 184Right-handed 310
Helix 10
10
C
53 57Right-handed 310
Helix 11
11
C
98 100Right-handed 310
Helix 12
12
C
125 128Right-handed 310
Helix 13
13
C
157 159Right-handed 310
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There are 9 sheets in PDB entry 3BPL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 30first strand
Strand 2
A
106 108anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
8 11first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
58 64anti-parallel
Strand 4
B
52 53anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 49first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
74 80anti-parallel
Strand 4
B
83 90anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 107first strand
Strand 2
B
113 119anti-parallel
Strand 3
B
158 162anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 152first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
171 179anti-parallel
Strand 4
B
194 197anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
83 86first strand
Strand 2
C
89 96anti-parallel
Strand 3
C
47 51anti-parallel
Strand 4
C
39 43anti-parallel
Strand 5
C
130 131parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 79first strand
Strand 2
C
64 69anti-parallel
Strand 3
C
106 112anti-parallel
Strand 4
C
115 124anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
136 142first strand
Strand 2
C
148 153anti-parallel
Strand 3
C
185 188anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
176 180first strand
Strand 2
C
161 169anti-parallel
Strand 3
C
197 205anti-parallel
Strand 4
C
222 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il