Analysis of interatomic Contacts of Structural Units in PDB entry:
3BRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BRW entry

There are 4 chains in PDB entry 3BRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 76LEU 411
B
LYS 78ASP 414
C
LYS 78GLY 413
D
MET 1ARG 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3BRW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
88 94Right-handed alpha
Helix 2
2
A
152 159Right-handed alpha
Helix 3
3
A
176 186Right-handed alpha
Helix 4
4
A
207 212Right-handed alpha
Helix 5
5
A
217 228Right-handed alpha
Helix 6
6
A
234 236Right-handed 310
Helix 7
7
A
281 289Right-handed alpha
Helix 8
8
A
358 377Right-handed alpha
Helix 9
9
A
379 407Right-handed alpha
Helix 10
10
B
84 87Right-handed 310
Helix 11
11
B
88 94Right-handed alpha
Helix 12
12
B
152 161Right-handed alpha
Helix 13
13
B
176 186Right-handed alpha
Helix 14
14
B
206 212Right-handed alpha
Helix 15
15
B
219 228Right-handed alpha
Helix 16
16
B
281 289Right-handed alpha
Helix 17
17
B
305 309Right-handed 310
Helix 18
18
B
358 378Right-handed alpha
Helix 19
19
B
379 407Right-handed alpha
Helix 20
20
C
88 94Right-handed alpha
Helix 21
21
C
152 161Right-handed alpha
Helix 22
22
C
176 186Right-handed alpha
Helix 23
23
C
270 272Right-handed 310
Helix 24
24
C
287 291Right-handed 310
Helix 25
25
C
359 377Right-handed alpha
Helix 26
26
C
379 410Right-handed alpha
Helix 27
27
D
15 26Right-handed alpha
Helix 28
28
D
64 75Right-handed alpha
Helix 29
29
D
87 92Right-handed alpha
Helix 30
30
D
93 105Right-handed alpha
Helix 31
31
D
120 124Right-handed 310
Helix 32
32
D
127 138Right-handed alpha
Helix 33
33
D
155 167Right-handed alpha
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There are 7 sheets in PDB entry 3BRW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
137 143first strand
Strand 2
A
124 132anti-parallel
Strand 3
A
110 121anti-parallel
Strand 4
A
100 106anti-parallel
Strand 5
A
170 171anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
229 232first strand
Strand 2
A
253 258anti-parallel
Strand 3
A
263 268anti-parallel
Strand 4
A
192 200parallel
Strand 5
A
293 298parallel
Strand 6
A
316 321parallel
Strand 7
A
333 337anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
137 140first strand
Strand 2
B
124 132anti-parallel
Strand 3
B
110 121anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
170 171anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
229 232first strand
Strand 2
B
253 257anti-parallel
Strand 3
B
263 268anti-parallel
Strand 4
B
192 200parallel
Strand 5
B
293 298parallel
Strand 6
B
316 321parallel
Strand 7
B
331 338anti-parallel
Strand 8
B
354 356anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
137 141first strand
Strand 2
C
124 133anti-parallel
Strand 3
C
110 121anti-parallel
Strand 4
C
99 106anti-parallel
Strand 5
C
170 171anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
229 231first strand
Strand 2
C
254 258anti-parallel
Strand 3
C
263 268anti-parallel
Strand 4
C
192 199parallel
Strand 5
C
293 297parallel
Strand 6
C
316 320parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
38 45first strand
Strand 2
D
50 57anti-parallel
Strand 3
D
2 10parallel
Strand 4
D
77 83parallel
Strand 5
D
111 116parallel
Strand 6
D
142 145parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il