Analysis of interatomic Contacts of Structural Units in PDB entry:
3BWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BWB entry

There are 2 chains in PDB entry 3BWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 12ASN 302
B
SER 16ASN 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3BWB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
78 91Right-handed alpha
Helix 2
2
A
107 114Right-handed alpha
Helix 3
3
A
128 139Right-handed alpha
Helix 4
4
A
139 144Right-handed alpha
Helix 5
5
A
145 148Right-handed 310
Helix 6
6
A
157 164Right-handed alpha
Helix 7
7
A
188 199Right-handed alpha
Helix 8
8
A
216 231Right-handed alpha
Helix 9
9
A
269 273Right-handed 310
Helix 10
10
A
275 279Right-handed 310
Helix 11
11
A
283 290Right-handed alpha
Helix 12
12
A
294 302Right-handed 310
Helix 13
13
B
77 91Right-handed alpha
Helix 14
14
B
107 114Right-handed alpha
Helix 15
15
B
128 139Right-handed alpha
Helix 16
16
B
139 144Right-handed alpha
Helix 17
17
B
145 148Right-handed 310
Helix 18
18
B
157 164Right-handed alpha
Helix 19
19
B
188 199Right-handed alpha
Helix 20
20
B
216 231Right-handed alpha
Helix 21
21
B
269 279Right-handed 310
Helix 22
22
B
283 291Right-handed alpha
Helix 23
23
B
294 301Right-handed 310
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There are 4 sheets in PDB entry 3BWB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 22first strand
Strand 2
A
30 44anti-parallel
Strand 3
B
30 44anti-parallel
Strand 4
B
19 21anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 74first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
30 44anti-parallel
Strand 5
B
30 44anti-parallel
Strand 6
B
49 55anti-parallel
Strand 7
B
63 67anti-parallel
Strand 8
B
70 74anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 155first strand
Strand 2
A
121 126parallel
Strand 3
A
98 103parallel
Strand 4
A
170 176parallel
Strand 5
A
200 210parallel
Strand 6
A
251 256anti-parallel
Strand 7
A
234 239anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
151 155first strand
Strand 2
B
121 126parallel
Strand 3
B
98 103parallel
Strand 4
B
170 176parallel
Strand 5
B
200 210parallel
Strand 6
B
251 256anti-parallel
Strand 7
B
234 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il