Analysis of interatomic Contacts of Structural Units in PDB entry:
3BWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BWM entry

There is 1 chain in PDB entry 3BWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 2PRO 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3BWM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 17Right-handed alpha
Helix 2
2
A
21 36Right-handed alpha
Helix 3
3
A
42 58Right-handed alpha
Helix 4
4
A
70 78Right-handed alpha
Helix 5
5
A
92 107Right-handed alpha
Helix 6
6
A
108 110Right-handed 310
Helix 7
7
A
118 123Right-handed alpha
Helix 8
8
A
125 131Right-handed alpha
Helix 9
9
A
143 145Right-handed 310
Helix 10
10
A
146 157Right-handed alpha
Helix 11
11
A
176 186Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3BWM.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 116first strand
Strand 2
A
85 90parallel
Strand 3
A
61 65parallel
Strand 4
A
137 140parallel
Strand 5
A
165 168parallel
Strand 6
A
204 212anti-parallel
Strand 7
A
189 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il