Analysis of interatomic Contacts of Structural Units in PDB entry:
3C0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C0M entry

There are 2 chains in PDB entry 3C0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 2ALA 468
B
GLU 2ALA 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3C0M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
27 34Right-handed alpha
Helix 3
3
A
34 40Right-handed alpha
Helix 4
4
A
59 62Right-handed 310
Helix 5
5
A
97 107Right-handed alpha
Helix 6
6
A
112 124Right-handed alpha
Helix 7
7
A
234 237Right-handed 310
Helix 8
8
A
350 353Right-handed 310
Helix 9
9
A
354 361Right-handed alpha
Helix 10
10
A
372 381Right-handed alpha
Helix 11
11
A
381 393Right-handed alpha
Helix 12
12
A
448 455Right-handed alpha
Helix 13
13
B
5 9Right-handed 310
Helix 14
14
B
27 40Right-handed alpha
Helix 15
15
B
59 62Right-handed 310
Helix 16
16
B
97 107Right-handed alpha
Helix 17
17
B
112 124Right-handed alpha
Helix 18
18
B
181 184Right-handed 310
Helix 19
19
B
234 239Right-handed 310
Helix 20
20
B
264 268Right-handed 310
Helix 21
21
B
354 361Right-handed alpha
Helix 22
22
B
364 368Right-handed 310
Helix 23
23
B
372 381Right-handed alpha
Helix 24
24
B
381 394Right-handed alpha
Helix 25
25
B
448 455Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 3C0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 13first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
23 25anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
140 145first strand
Strand 2
A
148 153anti-parallel
Strand 3
A
169 186anti-parallel
Strand 4
A
239 240parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
140 145first strand
Strand 2
A
148 153anti-parallel
Strand 3
A
169 186anti-parallel
Strand 4
A
289 321anti-parallel
Strand 5
A
338 345anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
420 421first strand
Strand 2
A
289 321anti-parallel
Strand 3
A
396 416anti-parallel
Strand 4
A
91 93parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
239 240first strand
Strand 2
A
169 186parallel
Strand 3
A
289 321anti-parallel
Strand 4
A
192 206anti-parallel
Strand 5
A
442 444anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
442 444first strand
Strand 2
A
192 206anti-parallel
Strand 3
A
289 321anti-parallel
Strand 4
A
396 416anti-parallel
Strand 5
A
215 229anti-parallel
Strand 6
A
270 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 93first strand
Strand 2
A
396 416parallel
Strand 3
A
215 229anti-parallel
Strand 4
A
458 466anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
245 246first strand
Strand 2
A
258 259anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 13first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
23 25anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 49first strand
Strand 2
B
54 57anti-parallel
Strand 3
B
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
140 145first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
169 179anti-parallel
Strand 4
B
289 321anti-parallel
Strand 5
B
185 186anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
140 145first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
169 179anti-parallel
Strand 4
B
289 321anti-parallel
Strand 5
B
420 421anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
415 416first strand
Strand 2
B
289 321anti-parallel
Strand 3
B
396 411anti-parallel
Strand 4
B
91 93parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
91 93first strand
Strand 2
B
396 411parallel
Strand 3
B
215 231anti-parallel
Strand 4
B
458 466anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
270 281first strand
Strand 2
B
215 231anti-parallel
Strand 3
B
396 411anti-parallel
Strand 4
B
289 321anti-parallel
Strand 5
B
338 345anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
185 186first strand
Strand 2
B
289 321anti-parallel
Strand 3
B
192 206anti-parallel
Strand 4
B
442 443anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
245 246first strand
Strand 2
B
258 259anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il