Analysis of interatomic Contacts of Structural Units in PDB entry:
3C5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3C5C entry

There are 4 chains in PDB entry 3C5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19ARG 185
B
 LEU 19ARG 185
C
 GLY 17ARG 185
D
 LEU 19ARG 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3C5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 43Right-handed alpha
Helix 2
2
A
84 89Right-handed alpha
Helix 3
3
A
102 124Right-handed alpha
Helix 4
4
A
135 142Right-handed 310
Helix 5
5
A
145 157Right-handed alpha
Helix 6
6
A
169 185Right-handed alpha
Helix 7
7
B
32 43Right-handed alpha
Helix 8
8
B
84 89Right-handed alpha
Helix 9
9
B
102 124Right-handed alpha
Helix 10
10
B
135 142Right-handed 310
Helix 11
11
B
145 156Right-handed alpha
Helix 12
12
B
168 184Right-handed alpha
Helix 13
13
C
32 43Right-handed alpha
Helix 14
14
C
84 89Right-handed alpha
Helix 15
15
C
102 124Right-handed alpha
Helix 16
16
C
135 142Right-handed 310
Helix 17
17
C
145 157Right-handed alpha
Helix 18
18
C
168 185Right-handed alpha
Helix 19
19
D
32 43Right-handed alpha
Helix 20
20
D
84 89Right-handed alpha
Helix 21
21
D
102 124Right-handed alpha
Helix 22
22
D
135 142Right-handed 310
Helix 23
23
D
145 157Right-handed alpha
Helix 24
24
D
168 185Right-handed alpha
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There are 4 sheets in PDB entry 3C5C. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 63first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
20 26parallel
Strand 4
A
93 99parallel
Strand 5
A
129 134parallel
Strand 6
A
159 162parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 63first strand
Strand 2
B
66 74anti-parallel
Strand 3
B
20 27parallel
Strand 4
B
93 99parallel
Strand 5
B
129 134parallel
Strand 6
B
159 162parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 63first strand
Strand 2
C
66 74anti-parallel
Strand 3
C
20 26parallel
Strand 4
C
93 99parallel
Strand 5
C
129 134parallel
Strand 6
C
159 162parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 63first strand
Strand 2
D
66 74anti-parallel
Strand 3
D
20 27parallel
Strand 4
D
93 99parallel
Strand 5
D
129 134parallel
Strand 6
D
159 162parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il