Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJC entry

There are 3 chains in PDB entry 3CJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 1ARG 372
D
LEU 1THR 260
G
MET 1PHE 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3CJC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
55 61Right-handed alpha
Helix 2
2
A
78 91Right-handed alpha
Helix 3
3
A
97 101Right-handed 310
Helix 4
4
A
112 126Right-handed alpha
Helix 5
5
A
137 145Right-handed alpha
Helix 6
6
A
172 175Right-handed 310
Helix 7
7
A
181 197Right-handed alpha
Helix 8
8
A
202 207Right-handed alpha
Helix 9
9
A
207 217Right-handed alpha
Helix 10
10
A
222 231Right-handed alpha
Helix 11
11
A
252 257Right-handed alpha
Helix 12
12
A
258 262Right-handed 310
Helix 13
13
A
263 268Right-handed 310
Helix 14
14
A
273 284Right-handed alpha
Helix 15
15
A
286 288Right-handed 310
Helix 16
16
A
289 296Right-handed alpha
Helix 17
17
A
301 305Right-handed 310
Helix 18
18
A
308 321Right-handed alpha
Helix 19
19
A
337 349Right-handed alpha
Helix 20
20
A
350 355Right-handed 310
Helix 21
21
A
358 366Right-handed alpha
Helix 22
22
A
367 372Right-handed 310
Helix 23
23
D
12 18Right-handed alpha
Helix 24
24
D
18 30Right-handed alpha
Helix 25
25
D
45 56Right-handed alpha
Helix 26
26
D
139 146Right-handed alpha
Helix 27
27
D
146 158Right-handed alpha
Helix 28
28
D
177 182Right-handed 310
Helix 29
29
D
184 189Right-handed alpha
Helix 30
30
D
218 225Right-handed alpha
Helix 31
31
D
234 240Right-handed alpha
Helix 32
32
D
242 250Right-handed alpha
Helix 33
33
G
5 11Right-handed alpha
Helix 34
34
G
31 35Right-handed 310
Helix 35
35
G
70 88Right-handed alpha
Helix 36
36
G
103 110Right-handed alpha
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There are 10 sheets in PDB entry 3CJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
132 136parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 44first strand
Strand 2
D
64 67parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
34 40anti-parallel
Strand 5
D
2 11parallel
Strand 6
D
255 258anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
90 96first strand
Strand 2
D
114 119anti-parallel
Strand 3
D
127 132anti-parallel
Strand 4
D
163 168parallel
Strand 5
D
212 217anti-parallel
Strand 6
D
192 194anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
27 29first strand
Strand 2
G
18 22anti-parallel
Strand 3
G
44 51anti-parallel
Strand 4
G
57 65anti-parallel
Strand 5
G
92 98parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
37 39first strand
Strand 2
G
115 117parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il